Detailed information NTG0739005

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QCG46_RS20995
• Genome accession: NZ_CP122315
• Coordinates: 4277110..4278102 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain HT-947
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4272110..4283102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QCG46_RS20975 (QCG46_20975)	otnK	4272886..4274052 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
QCG46_RS20980 (QCG46_20980)	ygbL	4274144..4274782 (+)	639	WP_001278994.1	aldolase	-
QCG46_RS20985 (QCG46_20985)	ygbM	4274787..4275563 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QCG46_RS20990 (QCG46_20990)	ygbN	4275652..4277016 (+)	1365	WP_000104441.1	GntP family transporter	-
QCG46_RS20995 (QCG46_20995)	rpoS	4277110..4278102 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
QCG46_RS21000 (QCG46_21000)	nlpD	4278165..4279259 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QCG46_RS21005 (QCG46_21005)	pcm	4279444..4280070 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QCG46_RS21010 (QCG46_21010)	surE	4280064..4280825 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QCG46_RS21015 (QCG46_21015)	truD	4280806..4281855 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QCG46_RS21020 (QCG46_21020)	ispF	4281852..4282331 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QCG46_RS21025 (QCG46_21025)	ispD	4282331..4283041 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=739005 QCG46_RS20995 WP_000081588.1 4277110..4278102(-) (rpoS) [Escherichia coli strain HT-947]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=739005 QCG46_RS20995 WP_000081588.1 4277110..4278102(-) (rpoS) [Escherichia coli strain HT-947]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715