Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OHL99_RS10270 Genome accession   NZ_CP107270
Coordinates   1940622..1943726 (+) Length   1034 a.a.
NCBI ID   WP_263932725.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1081168     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1935622..1948726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHL99_RS10250 (OHL99_10250) - 1936319..1936768 (-) 450 WP_003692085.1 CopD family copper resistance protein -
  OHL99_RS10255 (OHL99_10255) waaA 1936809..1938080 (-) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  OHL99_RS10260 (OHL99_10260) gnd 1938143..1939591 (-) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  OHL99_RS10265 (OHL99_10265) - 1939671..1939934 (-) 264 WP_017147189.1 hypothetical protein -
  OHL99_RS10270 (OHL99_10270) pilC 1940622..1943726 (+) 3105 WP_263932725.1 PilC family type IV pilus tip adhesin Machinery gene
  OHL99_RS10275 (OHL99_10275) - 1944378..1944662 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  OHL99_RS10280 (OHL99_10280) yccS 1945146..1947296 (-) 2151 WP_003697785.1 YccS family putative transporter -
  OHL99_RS10285 (OHL99_10285) - 1947413..1948639 (-) 1227 WP_003697786.1 PilT/PilU family type 4a pilus ATPase -

Sequence

Protein


Download         Length: 1034 a.a.        Molecular weight: 112889.25 Da        Isoelectric Point: 9.8866

>NTDB_id=739001 OHL99_RS10270 WP_263932725.1 1940622..1943726(+) (pilC) [Neisseria gonorrhoeae strain 1081168]
MNKTLKRQVFRHTALYAAILMFSHTGGGGGAMAQTHQYAIIMNGRNQPEVKQNVPSSIKDKDRRREYTYYTHRTGGGSVS
FNNNDTLVSQQSGTAVFGTATYLPPYGKVSGFDADALKERNNAVDWIRTTRIALAGYSYIDVICRSYTGCPKLVYKTRFT
FGQQGLKRKAGSKLDIYEDKSRENSPIYKLSDYPWLGVSFNLGSENTVQNSKLFNKLISSFREGNNNQTIVSTTEGNPIS
LGDRQREHTAVAYYLNAKLHLLDKKGIEDIAQGKIVDLGILKPHVETTGRSLLDFWSKWDIKDNGQIPVKLGLPQVKAGH
CTNKPNPNKNTKAPSPALTAPALWFGPGQDGKAEMYSASVSTYPDSSSSRIFLQELKTQTEPGKPGRYSLKSLNDGEIKS
RQPSFNGRQTIIRLDDGVHLIKLNGSKDEVAAFVNLNGNNTGKNDTFGIVKEANVNLDADEWKKVLLPWTVRGPDNDNKF
KSINQKPEKYSQRYRIRDNNGNRDLGDIVNSPIVAVGGYLATAANDGMVHIFKKNGGSDERSYNLKLSYIPGTMPRKDIQ
SQESTLAKELRAFAEKGYVGDRYGVDGGFVLRQVELSGQKHVFMFGAMGFGGRGAYALDLSKINGNYPAAAPLFDVKNGD
KNGKNGKNRVEVELGYTVGTPQIGKIRNGKYAAFLASGYAAKQIASQENKTALYVYDLKDTLGTPIAKIEVKGGKGGLSS
PTLVDKDLDGIVDIAYAGDRGGNMYRFDLSNSDPSKWSVSTIFEGGKPITSAPAVSRLADKRVVIFGTGSDLTEDDVLDT
KEQYIYGIFDDDKAANNVNASRGVLGSGLLEQHLTQENKTLFLNKRSDGSGSKGWAVKLTGGRRVTVKPTVVLRTAFVTI
RSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDHDSVAQYSGHKKTAGGKSVPIGCMWKNSKTVCPNGYVYDKPVN
VRYLDETETDGFSTTADGDAGGSGIDPAGRRPGKNNRCFSKKGVRTLLMNDLDSLDITGPMCGIKRLSWREVFF

Nucleotide


Download         Length: 3105 bp        

>NTDB_id=739001 OHL99_RS10270 WP_263932725.1 1940622..1943726(+) (pilC) [Neisseria gonorrhoeae strain 1081168]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGCGATGGCGCAAACCCATCAATACGCTATTATCATGAACGGGCGAAACCAGCCCGAGGTAAAGCAGAATG
TGCCATCTTCAATAAAGGACAAAGACAGGAGGCGCGAATATACTTATTATACGCACAGAACAGGAGGAGGCTCTGTCTCA
TTCAACAATAACGATACCCTTGTTTCCCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCACCTACCTGCCGCCCTACGG
CAAGGTTTCCGGTTTTGATGCCGACGCTCTGAAAGAGCGCAACAATGCCGTTGATTGGATTCGTACCACCCGCATCGCGC
TGGCAGGCTACTCCTACATCGACGTCATATGCAGAAGCTACACAGGCTGTCCCAAACTTGTCTATAAAACCCGATTTACC
TTCGGTCAACAAGGGTTGAAAAGAAAGGCAGGCAGCAAGCTGGATATATACGAAGACAAAAGCCGCGAAAATTCGCCCAT
TTACAAATTGTCGGATTATCCTTGGTTGGGCGTATCTTTCAATTTGGGCAGCGAGAATACCGTCCAAAATAGCAAATTAT
TCAACAAATTGATATCTTCTTTTAGAGAAGGCAATAATAATCAAACCATCGTCTCTACGACAGAAGGCAACCCTATTTCC
CTTGGCGACCGGCAGCGCGAACATACCGCCGTGGCCTATTATCTGAACGCCAAACTGCACCTGCTGGACAAAAAAGGGAT
TGAAGATATCGCCCAAGGCAAAATAGTGGATTTGGGTATCTTGAAACCGCACGTCGAGACGACAGGACGAAGCTTGCTAG
ATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATTCCGGTCAAGCTCGGCCTGCCGCAAGTCAAAGCAGGCCAC
TGCACCAACAAACCGAACCCCAATAAGAATACCAAAGCCCCTTCGCCGGCACTGACCGCCCCCGCGCTGTGGTTCGGACC
CGGGCAAGATGGTAAGGCGGAGATGTATTCCGCTTCGGTTTCCACCTACCCCGACAGTTCGAGCAGCCGCATCTTCCTCC
AAGAGCTGAAAACTCAAACCGAACCCGGCAAACCCGGCCGCTATTCCCTCAAATCTTTGAATGATGGTGAGATTAAAAGT
CGACAGCCGAGTTTCAACGGGCGGCAAACAATCATCCGATTGGATGACGGCGTACATTTGATCAAACTGAATGGAAGCAA
GGATGAGGTCGCCGCTTTTGTCAATTTAAATGGAAACAACACCGGCAAAAACGACACTTTCGGCATTGTTAAGGAAGCGA
ACGTCAATCTTGACGCCGACGAGTGGAAAAAAGTGCTGCTGCCTTGGACGGTTCGGGGTCCCGATAATGACAATAAATTT
AAATCAATTAACCAAAAACCAGAAAAATACAGCCAAAGATACCGCATCCGCGACAACAACGGCAATCGCGATTTGGGCGA
CATCGTCAACAGCCCGATTGTCGCGGTCGGCGGGTATTTGGCAACCGCCGCGAACGACGGGATGGTGCATATCTTCAAAA
AAAACGGCGGCAGTGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCAAGGATATTCAA
AGCCAAGAATCCACCCTTGCCAAAGAGCTGCGCGCCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGG
CGGCTTTGTCTTGCGCCAAGTCGAACTGAGCGGGCAAAAACACGTGTTTATGTTCGGCGCGATGGGTTTTGGCGGCAGGG
GCGCGTATGCCTTGGATTTAAGCAAAATCAACGGAAATTATCCGGCCGCCGCTCCCCTGTTTGATGTCAAAAATGGCGAT
AAAAACGGCAAAAACGGCAAAAATCGCGTGGAAGTGGAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAATCCG
CAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAACAAATTGCCAGCCAAGAAAATAAAACCGCGCTGT
ATGTGTATGATTTGAAAGACACCTTAGGTACGCCGATTGCAAAAATCGAAGTGAAGGGCGGCAAAGGCGGGCTTTCGTCC
CCCACGCTGGTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCGGGGCGGGAATATGTACCGCTT
TGATTTGAGCAATTCCGATCCTAGTAAATGGTCTGTAAGCACTATTTTCGAAGGCGGGAAGCCGATTACCTCCGCGCCCG
CCGTTTCCCGACTGGCAGACAAACGCGTCGTCATCTTCGGTACGGGCAGCGATTTGACCGAAGATGATGTACTCGATACG
AAAGAACAATATATTTACGGTATCTTTGACGACGATAAGGCGGCGAATAATGTAAATGCAAGCCGCGGCGTTTTGGGGAG
CGGGCTGCTCGAGCAACACCTTACTCAGGAAAATAAAACATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGG
GCTGGGCGGTGAAATTGACAGGCGGACGGCGCGTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTCACCATC
CGTAGCTATACGGGTAATGACAAATGCGGCGCGCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGAC
TCCGAGAAGCGCGCGCCCGATTGTGCCGGATCACGATTCGGTTGCACAATATTCCGGCCATAAGAAAACCGCCGGCGGCA
AGTCCGTCCCCATAGGCTGCATGTGGAAAAACAGCAAAACCGTCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAAT
GTGCGTTATCTGGATGAAACGGAAACAGACGGATTTTCAACGACGGCGGACGGCGATGCGGGCGGCAGCGGTATAGACCC
CGCCGGCAGGCGTCCCGGCAAAAACAACCGCTGCTTCTCCAAAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACA
GCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(505-844)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

74.24

100

0.755