Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   OHL99_RS00490 Genome accession   NZ_CP107270
Coordinates   104869..105414 (-) Length   181 a.a.
NCBI ID   WP_047917631.1    Uniprot ID   A0AA44U8U6
Organism   Neisseria gonorrhoeae strain 1081168     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99869..110414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHL99_RS00480 (OHL99_00480) - 100875..101387 (-) 513 WP_003687349.1 shikimate kinase -
  OHL99_RS00485 (OHL99_00485) pilQ 102655..104850 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  OHL99_RS00490 (OHL99_00490) pilP 104869..105414 (-) 546 WP_047917631.1 pilus assembly protein PilP Machinery gene
  OHL99_RS00495 (OHL99_00495) - 105432..106079 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  OHL99_RS00500 (OHL99_00500) pilN 106080..106679 (-) 600 WP_003687354.1 PilN domain-containing protein Machinery gene
  OHL99_RS00505 (OHL99_00505) pilM 106682..107797 (-) 1116 WP_003687356.1 type IV pilus biogenesis protein PilM -
  OHL99_RS00510 (OHL99_00510) - 107949..110345 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20097.62 Da        Isoelectric Point: 4.7529

>NTDB_id=738962 OHL99_RS00490 WP_047917631.1 104869..105414(-) (pilP) [Neisseria gonorrhoeae strain 1081168]
MKHYALLISFLALSACSQSSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETAKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIILNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPATEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=738962 OHL99_RS00490 WP_047917631.1 104869..105414(-) (pilP) [Neisseria gonorrhoeae strain 1081168]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAAGTTCTGAAGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGCCAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCCGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCATCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCACAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

97.79

100

0.978