Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OHL99_RS00270 Genome accession   NZ_CP107270
Coordinates   53082..56228 (-) Length   1048 a.a.
NCBI ID   WP_263932732.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1081168     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 48082..61228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHL99_RS00250 (OHL99_00250) - 49571..49960 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  OHL99_RS00260 (OHL99_00260) - 50123..50502 (-) 380 Protein_49 VOC family protein -
  OHL99_RS00265 (OHL99_00265) carA 50556..51689 (-) 1134 WP_003694721.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  OHL99_RS00270 (OHL99_00270) pilC 53082..56228 (-) 3147 WP_263932732.1 PilC family type IV pilus tip adhesin Machinery gene
  OHL99_RS00275 (OHL99_00275) apbC 57638..58717 (-) 1080 WP_003699443.1 iron-sulfur cluster carrier protein ApbC -
  OHL99_RS00285 (OHL99_00285) - 59091..59600 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  OHL99_RS00290 (OHL99_00290) nadR 59941..60381 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  OHL99_RS00295 (OHL99_00295) hpaC 60496..60996 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 1048 a.a.        Molecular weight: 114784.93 Da        Isoelectric Point: 9.9579

>NTDB_id=738960 OHL99_RS00270 WP_263932732.1 53082..56228(-) (pilC) [Neisseria gonorrhoeae strain 1081168]
MNKTLKRRVFRHTALYAAILMFSHTGGGGGQAQAQTYKYAIVMNERKQPEVKWKGQYNQSALKDKGRERTFSHTSQKNKF
GITSNFISFNNNDELVSQQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIHTTRPGLAGYGYDGIRCGSAQDCPK
LTYKTRFSFDNPNLVKTRGGLDRHTEPSRENSPIYKLKDHPWLGVSFNLGGEGTAKDGRSSSKLVSSFDENNSNSNQNLV
YTTEGHRISLGNWQRETTAMAYYLNAKLHLLDKKQIENIAPGKTVRLGVLKPSIDVKTQNTGLSGLLNFWSKWDIKDNGQ
IPVKLGLPQVKAGRCINKPNPNKNTKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTQTDPARPG
RHSLAALDTQNIKSREPNFNSRQTVIRLPGGVYKINPVKNGGRVAGFNGNDGKNDTFGIYKDRLVTPEADEWSEVLLPWT
ARYYGNDDIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDE
RSYELKLSYIPGTMERKDIENQDSTLAKELRTFAEKGYVGDRYGVDGGFVLRSITDDQDRQKHFFMFGAMGLGGRGAYAL
DLSKIDSNPVGVSMFDVQNESKNNGVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKQIASQENKTALYVYDLGNGSGSLI
KKIEVQGGKGGLSSPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSNSDPSKWSVSTIFEGGKPITSAPAVSRLADKRVVIF
GTGSDLTEDDVLDTKEQYIYGIFDDDKAANNVNASRGVLGSGLLEQHLTQENKTLFLNKRSDGSGSKGWAVKLTGGRRVT
VKPTVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDHDSVAQYSGHKKTAGGKSVPIGCMWKNSK
TVCPNGYVYDKPVNVRYLDETETDGFSTTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKR
LSWREVFF

Nucleotide


Download         Length: 3147 bp        

>NTDB_id=738960 OHL99_RS00270 WP_263932732.1 53082..56228(-) (pilC) [Neisseria gonorrhoeae strain 1081168]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCAGGCGCAGGCGCAAACGTATAAATACGCTATTGTGATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGA
AGGGTCAATATAATCAATCAGCATTAAAGGACAAAGGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACAAATTC
GGCATCACAAGCAATTTTATCTCATTCAACAATAACGATGAGCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCAC
AGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATT
GGATTCATACCACCCGGCCCGGGCTGGCAGGCTACGGCTACGACGGTATCCGTTGCGGAAGTGCCCAAGACTGTCCCAAA
CTTACCTATAAAACCCGATTTTCCTTCGATAATCCCAACTTGGTAAAAACAAGAGGCGGGCTGGATAGGCACACAGAGCC
AAGCCGCGAAAATTCGCCCATTTACAAATTGAAGGATCATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGGCGAGGGTA
CCGCCAAAGATGGCAGATCATCCAGCAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTC
TATACGACAGAAGGCCACCGTATTTCCCTTGGCAACTGGCAGCGCGAAACGACCGCCATGGCCTATTATCTGAACGCCAA
GCTGCACCTGCTGGACAAAAAACAGATTGAAAATATCGCGCCAGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCA
TCGATGTGAAGACACAAAATACGGGGCTTAGCGGCTTGCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAG
ATTCCGGTCAAGCTCGGCCTGCCGCAAGTCAAAGCAGGCCGCTGCATCAATAAACCGAACCCCAATAAGAATACCAAAGC
CCCTTCGCCGGCCCTGACCGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGG
TTTCTACCTACCCCGGCAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGACCCCGCCCGGCCCGGC
CGGCATTCCCTCGCCGCTTTGGATACGCAGAACATCAAAAGCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCG
ATTGCCGGGCGGCGTGTACAAGATCAACCCGGTCAAGAACGGCGGCCGGGTCGCGGGTTTTAATGGCAATGACGGCAAAA
ACGACACTTTCGGCATCTACAAGGACAGGCTCGTCACACCTGAGGCCGACGAGTGGAGCGAAGTGCTGCTGCCTTGGACG
GCTCGGTATTACGGTAATGACGATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATA
CAGCCAAAAATACCGCATCCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGA
TAACGGCGGTCGGCGGGTATCTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACGGATGAA
CGCAGCTACGAACTGAAGCTCAGCTACATCCCCGGTACGATGGAGCGTAAGGATATTGAAAACCAAGACTCCACCCTCGC
CAAAGAGCTGCGCACCTTTGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCAGCA
TTACAGATGACCAAGACAGGCAAAAACATTTCTTTATGTTCGGCGCAATGGGCCTTGGCGGCAGAGGCGCATACGCCTTG
GATTTAAGCAAAATCGACAGCAACCCGGTCGGCGTTTCCATGTTTGATGTCCAAAACGAGAGTAAAAATAATGGCGTGAA
ATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATG
CGGCTAAACAAATTGCCAGCCAAGAAAATAAAACCGCGCTGTATGTGTATGATTTGGGAAACGGCAGTGGTAGTCTGATT
AAAAAAATCGAAGTGCAGGGCGGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCATTGTCGA
TATCGCCTATGCCGGCGACCGGGGCGGGAATATGTACCGCTTTGATTTGAGCAATTCCGATCCTAGTAAATGGTCTGTAA
GCACTATTTTCGAAGGCGGGAAGCCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTCGTCATCTTC
GGTACGGGCAGCGATTTGACCGAAGATGATGTACTCGATACGAAAGAACAATATATTTACGGTATCTTTGACGACGATAA
GGCGGCGAATAATGTAAATGCAAGCCGCGGCGTTTTGGGGAGCGGGCTGCTCGAGCAACACCTTACTCAGGAAAATAAAA
CATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGGGCTGGGCGGTGAAATTGACAGGCGGACGGCGCGTTACC
GTCAAACCGACCGTGGTATTGCGTACCGCCTTTGTCACCATCCGTAGCTATACGGGTAATGACAAATGCGGCGCGCAAAC
CGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATCACGATT
CGGTTGCACAATATTCCGGCCATAAGAAAACCGCCGGCGGCAAGTCCGTCCCCATAGGCTGCATGTGGAAAAACAGCAAA
ACCGTCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGTTATCTGGATGAAACGGAAACAGACGGATTTTC
AACGACGGCGGACGGCGATGCGGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCT
CCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGC
TTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(526-858)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

70.349

100

0.711