Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QBL25_RS15115 Genome accession   NZ_CP122310
Coordinates   3427740..3429668 (+) Length   642 a.a.
NCBI ID   WP_409057554.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7185     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3422740..3434668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL25_RS15100 - 3424023..3424325 (+) 303 WP_409057551.1 YtxH domain-containing protein -
  QBL25_RS15105 - 3424388..3425812 (+) 1425 WP_409057552.1 xylulokinase -
  QBL25_RS15110 rcrP 3426007..3427740 (+) 1734 WP_409057553.1 ABC transporter ATP-binding protein Regulator
  QBL25_RS15115 rcrQ 3427740..3429668 (+) 1929 WP_409057554.1 ABC transporter ATP-binding protein Regulator
  QBL25_RS15120 - 3429674..3430993 (-) 1320 WP_409057555.1 RNA polymerase sigma factor -
  QBL25_RS15125 dnaG 3431112..3433028 (-) 1917 WP_409057556.1 DNA primase -
  QBL25_RS15130 - 3433072..3434334 (-) 1263 WP_409057557.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69276.68 Da        Isoelectric Point: 5.3188

>NTDB_id=738865 QBL25_RS15115 WP_409057554.1 3427740..3429668(+) (rcrQ) [Streptomyces sp. SYP-A7185]
MAGPGGRMMAGGGPDQRSMDFKGSGKRLLAQFRPERTTMYGMLAAGVLSVALTVLGPKILGKATDLLFAGIVGRDMPAGI
TKDQAIEGLRDKGDGGMADMLSGVDFTPGKGIDFDAMGEVLLLALGVFLVAGLLMAVSTRLSNHAINKTVYRMRGDVQTK
LSRLPLSYFDKRQRGEVLSRATNDLDNIGQTLQQTMGQLVNSALTIVGVLIMMFYVSPLLALVALVTVPLSFFVATKVGK
RSQPQFVQQWKTTGKLNAHIEEMYTGHNLVKVFGRQEESAKAFAEQNDALYEAGFKAQFNSGAMQPLMFFMSNINYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPGERPDQLRGRVEME
KVSFRYEKDKPLIENLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGAAKDVTREEIEEAARAAHADRFCRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGTHDALLAAEGAYARLYAAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=738865 QBL25_RS15115 WP_409057554.1 3427740..3429668(+) (rcrQ) [Streptomyces sp. SYP-A7185]
ATGGCCGGTCCTGGCGGACGGATGATGGCCGGGGGCGGCCCCGACCAGCGCTCGATGGACTTCAAGGGATCCGGCAAGCG
GCTCCTGGCGCAGTTCAGGCCCGAGCGCACCACGATGTACGGGATGCTCGCCGCCGGAGTGCTCAGCGTGGCGCTCACGG
TGCTCGGCCCGAAGATCCTCGGCAAGGCGACCGACCTGCTCTTCGCGGGCATCGTCGGCCGTGACATGCCCGCGGGCATC
ACCAAGGACCAGGCCATCGAGGGCCTGCGCGACAAGGGCGACGGCGGCATGGCCGACATGCTCTCCGGGGTCGACTTCAC
GCCGGGCAAGGGCATCGACTTCGACGCCATGGGCGAGGTGCTGCTGCTCGCCCTCGGCGTGTTCCTGGTCGCGGGACTGC
TGATGGCGGTGTCGACACGGCTGTCGAACCACGCCATCAACAAGACCGTCTACCGGATGCGCGGCGACGTCCAGACGAAG
CTGTCGCGCCTCCCCCTGTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTCCTGAGCCGGGCGACGAACGACCTCGACAA
CATCGGCCAGACCCTCCAGCAGACCATGGGTCAGCTGGTGAACTCAGCTCTCACCATCGTCGGCGTCCTGATCATGATGT
TCTACGTCTCGCCGCTGCTCGCCCTGGTGGCGCTCGTCACCGTGCCGCTGTCGTTCTTCGTGGCGACGAAGGTGGGCAAG
CGGTCCCAGCCGCAGTTCGTGCAGCAGTGGAAGACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CAACCTGGTGAAGGTCTTCGGGCGCCAGGAGGAGTCGGCCAAGGCCTTCGCCGAGCAGAACGACGCGTTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGGGCCATGCAGCCGCTGATGTTCTTCATGTCGAACATCAACTACGTCCTGGTGGCC
GTCGTCGGTGGTCTGCGGGTCGCGTCCGGCGCCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTCACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGTGTCGCCTCCGCCGAGCGGATCTTCGAGC
TGCTCGACGCGGAGGAGCAGGAGGCCGACCCGGTCCCGGGCGAGCGCCCCGACCAGCTGCGCGGCCGGGTCGAGATGGAG
AAGGTGTCCTTCCGCTACGAGAAGGACAAGCCGCTCATCGAGAACCTCTCCCTGAAGGTCGAGCCGGGCCACACGGTGGC
CATCGTCGGACCGACCGGCGCGGGCAAGACCACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACCGGCGGGCGCA
TCACGCTCGACGGGGTCGACATCGCGAAGATGTCACGCGACGAACTGCGGGCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGAGCCGCCAAGGACGTCACGCGCGAGGAGATCGAGGAGGC
GGCGCGGGCCGCCCACGCCGACCGCTTCTGCCGCACGCTGCCCGACGGCTACGACACGGTCATCGACGACGAGGGCACGG
GGGTGAGCGCGGGCGAGAAGCAGCTGATCACGATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGCTCGGTCGACACCCGCACGGAGGTGCTCATCCAGAAGGCGATGGCGCGGCTCGCGCACGGGCGGACCTCGTT
CGTCATCGCGCACCGGCTGTCCACGATCCGCGACGCGGACACCATCTTGGTGATGGAGGACGGCGCGATCGTCGAGCAGG
GCACGCACGACGCGCTGCTGGCCGCCGAGGGCGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCCCAGGCCGTGGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(47-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.939

96.262

0.394