Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QBL25_RS15110 Genome accession   NZ_CP122310
Coordinates   3426007..3427740 (+) Length   577 a.a.
NCBI ID   WP_409057553.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7185     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3421007..3432740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL25_RS15075 - 3421498..3422715 (+) 1218 WP_409057549.1 hypothetical protein -
  QBL25_RS15080 - 3422723..3423313 (+) 591 WP_409057550.1 hemerythrin domain-containing protein -
  QBL25_RS15100 - 3424023..3424325 (+) 303 WP_409057551.1 YtxH domain-containing protein -
  QBL25_RS15105 - 3424388..3425812 (+) 1425 WP_409057552.1 xylulokinase -
  QBL25_RS15110 rcrP 3426007..3427740 (+) 1734 WP_409057553.1 ABC transporter ATP-binding protein Regulator
  QBL25_RS15115 rcrQ 3427740..3429668 (+) 1929 WP_409057554.1 ABC transporter ATP-binding protein Regulator
  QBL25_RS15120 - 3429674..3430993 (-) 1320 WP_409057555.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62511.71 Da        Isoelectric Point: 5.9320

>NTDB_id=738864 QBL25_RS15110 WP_409057553.1 3426007..3427740(+) (rcrP) [Streptomyces sp. SYP-A7185]
MLIRLLRAHLGPYKKPIALLVLLQFLQTCASLYLPTLNADIIDEGVVKGDTGYILSFGGLMIAVTVAQVICNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVMALGLDVPLSGV
LVAVVPVLAVCVSLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQGRFRRANAELTEVSLGTGKLLAL
MFPIVMTVVNISSIAVVWFGAHRIESGGMQIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PASPVTELRRHGHLEIRDAGFRYPGAEEPVLKGVGLVARPGETTAVIGSTGSGKSTLLNLVPRLIDSTEGEVLVDGVPVH
TIEPALLARTVGLVPQKPYLFAGTIATNLRYGNPDATDEELWHALEVAQAKGFVESLEEGLNAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVSTIRDADRIIVLDEGRVVGTGRHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=738864 QBL25_RS15110 WP_409057553.1 3426007..3427740(+) (rcrP) [Streptomyces sp. SYP-A7185]
GTGCTCATACGACTCCTGCGGGCCCACCTGGGCCCGTACAAGAAGCCCATCGCGCTGCTGGTGCTGCTCCAGTTCCTCCA
GACCTGCGCCTCGCTCTACCTGCCCACGCTCAACGCCGACATCATCGACGAGGGCGTCGTGAAGGGCGACACGGGCTACA
TCCTGTCGTTCGGCGGCCTCATGATCGCCGTCACGGTCGCCCAGGTGATCTGCAACGTGGGCGCCGTCTACTACGGCGCC
CGCACCGCGTCCGCGCTCGGCCGTGACGTCCGCGCCGCCGTCTTCGACCGCGTGCAGTCCTTCTCCGCCAGGGAGCTCGG
CCAGTTCGGCGCCCCGTCGCTGATCACCCGCACCACGAACGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTCATGGCCCTCGGCCTCGACGTACCGCTCTCGGGCGTC
CTGGTCGCCGTCGTGCCCGTCCTCGCGGTCTGCGTGAGCCTGATCGTGCGGCGGCTGCGCCCGCTCTTCCGCACCATGCA
GGTGCGCCTGGACACCGTGAACCGCGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAAGGCCGCTTCCGGCGGGCCAACGCCGAGCTGACCGAGGTGTCGCTCGGCACCGGCAAGCTGCTCGCCCTG
ATGTTCCCGATCGTCATGACCGTCGTGAACATCTCCTCGATCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGAGAGCGG
CGGCATGCAGATCGGGGCGCTCACAGCGTTCCTCGCGTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTGGACACCGAGAGCAGCGTGGTGCCC
CCGGCATCCCCCGTCACCGAGCTGCGGCGCCACGGCCACCTGGAGATCCGGGACGCGGGCTTCCGCTACCCCGGCGCCGA
GGAGCCCGTCCTGAAGGGCGTCGGCCTGGTCGCACGGCCGGGCGAGACGACCGCCGTGATCGGATCGACCGGCAGCGGCA
AGTCGACGCTGCTCAACCTCGTGCCGCGGCTCATCGACAGCACCGAGGGCGAGGTCCTGGTGGACGGCGTGCCCGTGCAC
ACCATCGAGCCCGCCCTGCTCGCGCGGACGGTGGGCCTCGTGCCGCAGAAGCCGTACCTCTTCGCCGGCACGATCGCCAC
CAACCTCCGCTACGGAAACCCGGACGCGACCGACGAGGAGCTCTGGCACGCCCTGGAGGTCGCCCAGGCCAAGGGCTTCG
TCGAGAGCCTGGAGGAGGGGCTGAACGCGCCCGTCTCGCAGGGCGGCACGAACGTCTCCGGCGGCCAGCGCCAGCGCCTG
GCGATCGCCAGGACGCTCGTACAGCGCCCCGAGATCTATCTCTTCGACGACTCCTTCTCGGCCCTCGACTACGCCACCGA
CGCCGCCCTGCGGGCCGCGCTCGGCCGCGAGACCGCCGAGGCCACGGTCGTGATCGTCGCCCAGCGCGTGTCGACGATCC
GGGACGCCGACCGCATCATCGTCCTGGACGAGGGCCGGGTCGTGGGGACGGGACGCCATCACGAGCTGATGGAGAGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.536

97.054

0.393