Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   QBL25_RS12175 Genome accession   NZ_CP122310
Coordinates   2765675..2767768 (+) Length   697 a.a.
NCBI ID   WP_409057048.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7185     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2760675..2772768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL25_RS12150 - 2760803..2761573 (+) 771 WP_409057045.1 ABC transporter permease -
  QBL25_RS12155 - 2761680..2762669 (+) 990 WP_409062619.1 COX15/CtaA family protein -
  QBL25_RS12160 - 2762695..2763783 (-) 1089 WP_409057046.1 amidohydrolase family protein -
  QBL25_RS12165 - 2763876..2764223 (-) 348 WP_409057047.1 hypothetical protein -
  QBL25_RS12170 - 2764333..2765286 (-) 954 WP_409062620.1 heme o synthase -
  QBL25_RS12175 recP/tkt 2765675..2767768 (+) 2094 WP_409057048.1 transketolase Machinery gene
  QBL25_RS12180 tal 2767803..2768921 (+) 1119 WP_409057049.1 transaldolase -
  QBL25_RS12185 zwf 2768927..2770450 (+) 1524 WP_409057050.1 glucose-6-phosphate dehydrogenase -
  QBL25_RS12190 opcA 2770447..2771475 (+) 1029 WP_409057051.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  QBL25_RS12195 pgl 2771517..2772251 (+) 735 WP_409062621.1 6-phosphogluconolactonase -

Sequence

Protein


Download         Length: 697 a.a.        Molecular weight: 74875.80 Da        Isoelectric Point: 5.0629

>NTDB_id=738857 QBL25_RS12175 WP_409057048.1 2765675..2767768(+) (recP/tkt) [Streptomyces sp. SYP-A7185]
MSTKPTTTDLEWTELDQRAVDTARVLAMDSVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADAEWTGRDRFVLSAGHSS
LTLYIQLYLAGFGLELDDLKAFRTWGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPETAAGESPF
DHHIFAIAGDGCLQEGISGEASSLAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTMKRYEAYGWHVQRVEPKENGDLDP
AALYAAIQAAKAETERPSFIAMRSIIAWPAPNAQNTEAAHGSALGDEEVAATKRVLGFDPEKNFEVADEVLAHTRAALDR
GRDAKAEWEKGFAAWRSSNSERAAEFDRIAAGELPQGWEEKLPVFETGKGVATRAASGKVLQALGAVIPELWGGSADLAG
SNNTTIDKTSSFLPTGNPLPGANPYGRTIHFGIREHSMAAEMNGIALHGNTRIFGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETAVVWREILKRYTKEFGKGAPHGLALTRQGVPTYDREV
TEGAVKGGYVLFEADGGTPEVVLIGTGSEVQLAVEAREQLQAAGVPTRVVSMPCVEWFEAQDQGYRDSVLPPSVKARVAV
EAGIGLTWHRFVGDAGRIVSLEHFGASADGKVLFREFGFTADAVASAARESIDAAQR

Nucleotide


Download         Length: 2094 bp        

>NTDB_id=738857 QBL25_RS12175 WP_409057048.1 2765675..2767768(+) (recP/tkt) [Streptomyces sp. SYP-A7185]
GTGAGCACCAAGCCGACCACCACAGACCTCGAGTGGACCGAACTGGACCAGCGGGCTGTTGATACTGCCCGCGTCCTGGC
CATGGACTCCGTACAGAAGGTCGGCAACGGCCATCCGGGTACGGCCATGAGCCTCGCGCCTGCCGCGTACACCCTCTTCC
AGAAGGTGATGCGGCACGATCCCGCGGACGCCGAGTGGACCGGGCGCGACCGGTTCGTCCTGTCCGCGGGCCACTCGTCC
CTGACCCTCTACATCCAGCTCTACCTGGCCGGCTTCGGCCTGGAGCTCGATGACCTGAAGGCCTTCCGCACCTGGGGCTC
GAAGACCCCCGGCCACCCGGAGTACGGGCACACCACGGGCGTGGAGACGACGACGGGCCCCCTCGGCCAGGGCGTCGCCA
ACGCCGTGGGCATGGCGATGGCCGCCCGTTACGAGCGTGGCCTGTTCGACCCGGAGACCGCTGCCGGCGAGTCGCCGTTC
GACCACCACATCTTCGCGATCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCCGGCGAGGCGTCGTCGCTGGCCGGGCA
CCAGAAGCTCGGCAACCTCGTGCTGCTGTGGGACGACAACCACATCTCCATCGAGGGCGACACGGAGACCGCGGTGTCCG
AGGACACCATGAAGCGGTACGAGGCCTACGGCTGGCACGTCCAGCGCGTGGAGCCCAAGGAGAACGGCGACCTCGACCCG
GCCGCCCTCTACGCCGCGATCCAGGCCGCGAAGGCGGAGACGGAGCGCCCCTCCTTCATCGCGATGCGCTCGATCATCGC
CTGGCCCGCCCCGAACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGCGACGAAGAGGTCGCGGCCACCAAGC
GCGTCCTCGGCTTCGACCCGGAAAAGAACTTCGAGGTCGCCGACGAGGTCCTCGCGCACACCCGTGCCGCGCTCGACCGC
GGCCGTGACGCCAAGGCCGAGTGGGAGAAGGGCTTCGCCGCCTGGCGCTCCTCGAACTCCGAGCGCGCCGCCGAGTTCGA
CCGCATCGCCGCGGGCGAGCTGCCGCAGGGCTGGGAGGAGAAGCTCCCGGTCTTCGAGACGGGCAAGGGCGTCGCGACGC
GTGCCGCGTCCGGCAAGGTCCTCCAGGCGCTCGGCGCGGTGATCCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCGGGC
TCGAACAACACCACGATCGACAAGACGTCGTCGTTCCTCCCCACGGGCAACCCCCTGCCGGGAGCGAACCCGTACGGCCG
AACGATCCACTTCGGCATCCGCGAGCACTCCATGGCCGCGGAGATGAACGGCATCGCGCTGCACGGCAACACCCGCATCT
TCGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTCCGCCTGTCCGCGCTGATGCACCTCCCGGTGACG
TACGTGTGGACGCACGACTCCATCGGTCTCGGCGAGGACGGCCCGACGCACCAGCCGGTCGAGCACCTGGCCTCGCTGCG
CGCCATCCCGGGCCTGAACGTCGTCCGCCCGGCGGACGCGAACGAGACCGCGGTCGTGTGGCGCGAGATCCTCAAGCGCT
ACACCAAGGAGTTCGGCAAGGGCGCCCCGCACGGCCTCGCGCTGACCCGTCAGGGCGTGCCCACGTACGACCGCGAGGTC
ACCGAGGGCGCCGTCAAGGGCGGCTACGTCCTGTTCGAGGCCGACGGCGGCACTCCCGAGGTCGTCCTCATCGGCACCGG
CTCCGAGGTGCAGCTCGCCGTCGAGGCGCGCGAGCAGCTCCAGGCCGCGGGCGTGCCCACGCGCGTCGTCTCGATGCCGT
GCGTCGAGTGGTTCGAAGCGCAGGACCAGGGGTACCGCGACAGCGTCCTTCCGCCGTCCGTCAAGGCGCGCGTGGCGGTC
GAGGCGGGCATCGGCCTGACCTGGCACCGCTTCGTGGGTGACGCCGGGCGCATCGTCTCGCTGGAGCACTTCGGTGCCTC
GGCCGACGGCAAGGTGCTGTTCCGCGAGTTCGGCTTCACCGCCGACGCGGTCGCGTCCGCCGCCCGGGAATCGATCGACG
CCGCTCAGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)

Transketolase, C-terminal domain (Transketolase_C)

(578-684)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

43.363

97.274

0.422