Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5937_RS04375 Genome accession   NZ_CP107262
Coordinates   792989..793618 (-) Length   209 a.a.
NCBI ID   WP_159339193.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain 2022CK-00320     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 787989..798618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5937_RS04360 (N5937_04360) helD 788230..790284 (-) 2055 WP_159339192.1 DNA helicase IV -
  N5937_RS04365 (N5937_04365) - 790408..790854 (+) 447 WP_103178960.1 YccF domain-containing protein -
  N5937_RS04370 (N5937_04370) yccS 790873..793008 (+) 2136 WP_103178959.1 YccS family putative transporter -
  N5937_RS04375 (N5937_04375) sxy/tfoX 792989..793618 (-) 630 WP_159339193.1 TfoX/Sxy family DNA transformation protein Regulator
  N5937_RS04380 (N5937_04380) sulA 793836..794345 (+) 510 WP_103178957.1 SOS-induced cell division inhibitor SulA -
  N5937_RS04385 (N5937_04385) ompA 794700..795755 (+) 1056 WP_263951019.1 porin OmpA -
  N5937_RS04390 (N5937_04390) matP 795822..796277 (-) 456 WP_103178956.1 macrodomain Ter protein MatP -
  N5937_RS04395 (N5937_04395) - 796464..798224 (+) 1761 WP_156238323.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24110.80 Da        Isoelectric Point: 6.2681

>NTDB_id=738830 N5937_RS04375 WP_159339193.1 792989..793618(-) (sxy/tfoX) [Leclercia adecarboxylata strain 2022CK-00320]
MKKLSYERIYQSAEYLSPLGEVQYRALFGGYTLAVDDTVFAMVSEGELYLRACEESAPYCVKHASSFLSLVKRGRPVLLN
YFRVDEGLWQDRETLLQLSSFALEAARRERCERYKRERLKDLPNLTFQLEILLYEAGITNEEALRELGAEQCWLKIRALN
KHLSYKVLFALEGAITGLHVAALPEVRRQELVEWYKKLPVETPVTPAVD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=738830 N5937_RS04375 WP_159339193.1 792989..793618(-) (sxy/tfoX) [Leclercia adecarboxylata strain 2022CK-00320]
ATGAAAAAGTTATCGTATGAACGGATCTATCAATCAGCAGAATACCTGTCTCCTCTGGGCGAAGTTCAGTATCGTGCCCT
GTTTGGCGGTTACACTCTGGCGGTAGATGACACGGTATTTGCCATGGTGTCGGAAGGGGAGTTATACCTGCGGGCCTGTG
AGGAGAGTGCACCCTACTGCGTAAAGCATGCCTCGTCTTTCCTGTCGCTGGTGAAGCGGGGGCGGCCGGTGTTGTTAAAC
TATTTTCGCGTCGATGAAGGACTCTGGCAGGATCGCGAAACGCTTCTGCAGCTCTCGTCGTTTGCGCTGGAGGCGGCGCG
GCGGGAGCGCTGCGAACGCTACAAGCGCGAGAGGCTGAAAGATTTACCCAATCTCACCTTTCAGCTGGAGATCCTGCTCT
ATGAAGCGGGCATCACCAATGAAGAGGCATTACGTGAGCTGGGAGCAGAACAGTGCTGGCTGAAGATCAGAGCGCTGAAC
AAGCACCTCAGTTACAAGGTGCTGTTTGCGCTGGAAGGGGCGATCACCGGGCTCCACGTCGCTGCGCTCCCGGAAGTCAG
ACGCCAGGAGCTGGTGGAGTGGTACAAAAAGCTGCCGGTTGAGACGCCCGTCACTCCGGCAGTTGATTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.596

94.737

0.565