Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N5938_RS26885 Genome accession   NZ_CP107257
Coordinates   5662554..5663189 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 2019CK-00034     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5657554..5668189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5938_RS26855 (N5938_26855) murB 5658652..5659671 (-) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -
  N5938_RS26860 (N5938_26860) - 5659668..5660132 (-) 465 WP_004350898.1 low molecular weight protein-tyrosine-phosphatase -
  N5938_RS26865 (N5938_26865) kdsB 5660132..5660896 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N5938_RS26870 (N5938_26870) - 5660896..5661081 (-) 186 WP_003091157.1 Trm112 family protein -
  N5938_RS26875 (N5938_26875) lpxK 5661119..5662117 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  N5938_RS26880 (N5938_26880) - 5662117..5662557 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  N5938_RS26885 (N5938_26885) exbB 5662554..5663189 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N5938_RS26890 (N5938_26890) comA 5663262..5665487 (-) 2226 WP_023085388.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N5938_RS26895 (N5938_26895) - 5665618..5666151 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  N5938_RS26900 (N5938_26900) - 5666239..5667483 (-) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=738823 N5938_RS26885 WP_003091163.1 5662554..5663189(-) (exbB) [Pseudomonas aeruginosa strain 2019CK-00034]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=738823 N5938_RS26885 WP_003091163.1 5662554..5663189(-) (exbB) [Pseudomonas aeruginosa strain 2019CK-00034]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAGGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81