Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   QBL01_RS06555 Genome accession   NZ_CP121769
Coordinates   1310741..1313017 (-) Length   758 a.a.
NCBI ID   WP_043896234.1    Uniprot ID   -
Organism   Glaesserella parasuis strain Z44     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1305741..1318017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS06520 (QBL01_06520) tadA 1306879..1307415 (+) 537 WP_043895712.1 tRNA adenosine(34) deaminase TadA -
  QBL01_RS06525 (QBL01_06525) yfbV 1307397..1307831 (-) 435 WP_075621105.1 terminus macrodomain insulation protein YfbV -
  QBL01_RS06530 (QBL01_06530) - 1308010..1308738 (+) 729 WP_021110792.1 hypothetical protein -
  QBL01_RS06535 (QBL01_06535) - 1308747..1309310 (+) 564 WP_075621106.1 septation protein A -
  QBL01_RS06540 (QBL01_06540) yciA 1309294..1309734 (+) 441 WP_075621107.1 acyl-CoA thioester hydrolase YciA -
  QBL01_RS06545 (QBL01_06545) - 1309746..1310042 (+) 297 WP_021110790.1 YciI family protein -
  QBL01_RS06550 (QBL01_06550) - 1310129..1310703 (+) 575 Protein_1268 GDP-mannose 4,6-dehydratase -
  QBL01_RS06555 (QBL01_06555) rec2 1310741..1313017 (-) 2277 WP_043896234.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QBL01_RS06560 (QBL01_06560) uspA 1313332..1313757 (+) 426 WP_021110787.1 universal stress protein UspA -
  QBL01_RS06565 (QBL01_06565) alaS 1313982..1316606 (+) 2625 WP_042905644.1 alanine--tRNA ligase -
  QBL01_RS06570 (QBL01_06570) csrA 1316670..1316855 (+) 186 WP_021109569.1 carbon storage regulator CsrA -
  QBL01_RS06575 (QBL01_06575) galU 1317036..1317923 (+) 888 WP_021110785.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 758 a.a.        Molecular weight: 86284.73 Da        Isoelectric Point: 9.0916

>NTDB_id=738817 QBL01_RS06555 WP_043896234.1 1310741..1313017(-) (rec2) [Glaesserella parasuis strain Z44]
MSIDRVCLMLFFGLLPLIVLPASWLGYVVVFSLALALWGVWRGKLGILLLGGVLAVSYAQIMQLAKKHQEQTAVKVQERV
LVKQILKQQEYQTAVVERANGDYVYVNWQADEPLILEASYNAELALKPLSARLNDGNFDRQKWYVAQHISATATVKKAVK
VNEQQGLRAIWLDRMREQTAPFATQGLLLALAFGERAWLSQSHWEIFQQTTTAHLIAISGSHIVLVYLLAFWTAKAGQWL
LLRFRYLKAVGLSLYFARGVGWCVALGYSFLAGFQIPTVRAMVAISLVLLVQYARRHYTPWQLWLRGVVLLVVFDPLTLL
SDSFWLSVLAVASLIIWYQAFPLKRFDFVKNMQNRVMKLLLELFHLQLGIWLVFSPIQLSFFDGTSPFALLANLIIVPLY
SFILIPLILFSLLTDNLFQTWWLCHQLAEWGIDWIEPFSHHWLYLSVDQQWGLICLNLLIIIGLYGVFQQRFSLYYGLAT
VALPLALWIGFHFVKDTLKPPLVKWVNFDVGQGLAMGLIYQHQGKQKAILYDTGVAWQGGTMAELEILPYLRREGIVVEA
IFVSHDDNDHAGGVLPLLQAYPNARLILSGKNHYSNQVAEPCIAGNQWQFSTMHLEAIYPLQLSERAKNEHSCVLRVSIG
QYRLLLTGDSGIAEERQYASQIGKIDFLQVGHHGSKTSTSQTLLAHIQPTWAIISAGRWNPWKMPNSQVIQRLEQYQVKW
LNTAQVGMIQVDFYSDNYNISTARNRFSPWYQGIGANE

Nucleotide


Download         Length: 2277 bp        

>NTDB_id=738817 QBL01_RS06555 WP_043896234.1 1310741..1313017(-) (rec2) [Glaesserella parasuis strain Z44]
ATGTCTATTGATCGTGTCTGTTTAATGCTCTTTTTCGGTTTATTGCCGTTGATTGTTCTGCCTGCTTCGTGGCTTGGCTA
TGTGGTGGTATTTTCTCTTGCCCTTGCATTATGGGGAGTATGGCGTGGGAAATTGGGGATCTTGCTGTTGGGTGGTGTGT
TAGCGGTGAGTTACGCCCAGATTATGCAACTTGCAAAAAAACATCAGGAACAGACCGCTGTTAAGGTGCAAGAGCGGGTG
TTAGTGAAGCAAATTTTAAAACAGCAAGAATATCAAACTGCCGTTGTAGAGCGTGCTAATGGGGACTATGTTTATGTCAA
TTGGCAAGCTGATGAGCCATTGATACTGGAAGCAAGTTATAACGCGGAACTGGCATTGAAGCCTTTGTCCGCTCGCTTAA
ATGATGGCAATTTTGATCGACAAAAATGGTATGTGGCTCAACATATCTCAGCAACAGCTACGGTCAAAAAAGCAGTAAAA
GTGAACGAACAACAAGGCTTGCGTGCAATTTGGCTTGATCGTATGCGAGAACAGACCGCCCCTTTTGCAACGCAAGGGTT
ACTGCTTGCCCTTGCTTTTGGTGAACGGGCTTGGTTAAGTCAAAGCCATTGGGAGATCTTTCAGCAAACAACCACTGCTC
ATTTGATTGCCATTTCAGGCTCGCATATTGTTCTGGTTTATCTGTTAGCCTTTTGGACGGCGAAAGCTGGGCAGTGGTTA
TTATTGCGATTTCGTTATCTGAAAGCGGTGGGGTTGTCCTTGTATTTTGCAAGGGGAGTAGGGTGGTGTGTGGCGTTGGG
ATATAGTTTTTTGGCAGGCTTCCAAATTCCAACGGTACGGGCAATGGTGGCGATTTCATTGGTTTTGCTGGTGCAATATG
CTCGTCGTCATTATACGCCTTGGCAGTTATGGCTTCGTGGTGTGGTGCTATTAGTCGTCTTTGATCCGCTGACGTTACTT
TCCGATAGCTTTTGGCTCTCTGTTTTGGCTGTTGCTAGCCTAATTATTTGGTATCAGGCTTTTCCACTCAAGCGGTTTGA
TTTTGTCAAAAATATGCAAAATCGAGTGATGAAGTTGCTGTTAGAGTTGTTTCATCTGCAGTTAGGCATTTGGCTAGTGT
TCTCGCCTATTCAACTCAGTTTTTTTGATGGCACATCACCTTTCGCTTTGTTAGCCAATTTGATCATTGTTCCACTTTAT
AGCTTTATTCTTATCCCATTGATTTTATTTAGTTTATTAACAGATAACCTATTTCAAACTTGGTGGCTTTGCCATCAACT
TGCAGAGTGGGGGATTGATTGGATTGAGCCATTTTCCCATCATTGGCTCTATTTAAGTGTCGATCAACAATGGGGATTAA
TATGCCTTAATTTATTGATTATAATAGGATTATATGGTGTTTTTCAGCAACGTTTTTCTCTCTATTATGGGTTAGCAACA
GTGGCATTGCCTTTAGCATTGTGGATCGGATTTCATTTTGTAAAAGATACACTTAAACCACCACTTGTAAAATGGGTGAA
TTTTGATGTGGGGCAAGGGTTGGCAATGGGATTGATTTATCAACACCAAGGTAAACAGAAAGCCATTCTCTATGATACAG
GCGTTGCGTGGCAAGGTGGTACAATGGCGGAATTGGAAATACTGCCCTATTTACGCCGTGAAGGGATAGTGGTCGAAGCT
ATTTTTGTTAGCCACGATGATAACGATCACGCTGGGGGCGTTTTGCCATTACTACAAGCCTACCCAAATGCACGGTTGAT
CCTTTCGGGTAAAAATCATTATAGTAACCAAGTCGCCGAGCCTTGTATAGCAGGCAATCAGTGGCAGTTCAGCACAATGC
ACCTTGAAGCGATTTATCCTTTACAACTGAGCGAGCGAGCTAAAAATGAACACTCTTGTGTATTACGAGTGTCGATAGGG
CAATATAGATTGCTTCTTACTGGGGATAGTGGGATTGCGGAAGAACGACAATATGCAAGCCAGATCGGTAAGATCGATTT
TCTTCAAGTAGGACACCACGGCAGTAAAACCAGTACCAGCCAAACTTTGTTAGCTCACATCCAACCCACTTGGGCGATTA
TTTCGGCTGGGCGTTGGAACCCGTGGAAAATGCCAAATAGTCAAGTTATTCAACGGCTTGAGCAGTATCAAGTGAAGTGG
CTTAATACTGCTCAAGTGGGAATGATCCAAGTCGATTTTTATTCAGATAATTACAACATTTCCACCGCAAGAAACCGCTT
TAGTCCTTGGTATCAGGGGATAGGGGCAAATGAATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(524-693)

Competence protein (Competence)

(191-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

42.025

95.119

0.4