Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   QBL01_RS04130 Genome accession   NZ_CP121769
Coordinates   788959..790335 (-) Length   458 a.a.
NCBI ID   WP_261482606.1    Uniprot ID   -
Organism   Glaesserella parasuis strain Z44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 783959..795335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS04105 (QBL01_04105) - 784212..785000 (+) 789 WP_279378639.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  QBL01_RS04110 (QBL01_04110) - 785195..785869 (+) 675 WP_279378640.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  QBL01_RS04115 (QBL01_04115) - 785913..787367 (-) 1455 WP_279378641.1 aminoacyl-histidine dipeptidase -
  QBL01_RS04120 (QBL01_04120) gpt 787547..788026 (+) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  QBL01_RS04125 (QBL01_04125) gmk 788280..788906 (+) 627 WP_075606467.1 guanylate kinase -
  QBL01_RS04130 (QBL01_04130) radA/sms 788959..790335 (-) 1377 WP_261482606.1 DNA repair protein RadA Machinery gene
  QBL01_RS04135 (QBL01_04135) pilA 790523..790969 (+) 447 WP_160442335.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QBL01_RS04140 (QBL01_04140) - 791310..791675 (+) 366 WP_160433175.1 DUF559 domain-containing protein -
  QBL01_RS04145 (QBL01_04145) pilB 792111..793496 (+) 1386 WP_279378642.1 GspE/PulE family protein Machinery gene
  QBL01_RS04150 (QBL01_04150) pilC 793489..794685 (+) 1197 WP_279378643.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49488.15 Da        Isoelectric Point: 7.4392

>NTDB_id=738801 QBL01_RS04130 WP_261482606.1 788959..790335(-) (radA/sms) [Glaesserella parasuis strain Z44]
MAKAPKTAYVCNDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKIQRLSEIDLQEVPRFSSGFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFLNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSDALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=738801 QBL01_RS04130 WP_261482606.1 788959..790335(-) (radA/sms) [Glaesserella parasuis strain Z44]
ATGGCAAAAGCACCCAAAACTGCGTATGTATGTAATGATTGTGGCGCGGAATATGCTCGTTGGATGGGACAGTGTAAGGC
GTGTTTAGCGTGGAACACCATTAGCGAAGTCCGTCTGATTTCGGCAAAAGAGAGCAAAAGTGATCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAATTCAGCGGCTGTCTGAAATTGATTTGCAGGAAGTGCCTCGTTTTAGCAGTGGTTTTTAT
GAGCTAGATCGTGTGCTGGGGGGCGGTATTGTACCTGGTAGTGCGATTTTGATCGGCGGACACCCCGGCGCAGGGAAAAG
TACCTTGCTCTTGCAGGTAATGTGCGGTTTATCGCAAAGTGTGCCGACCCTTTATGTGACGGGGGAAGAGTCGCTACAAC
AGGTGGCAATGCGTGCTAACCGCTTGGGCTTGCCGACGGACAATCTAAAAATGTTATCTGAAACCTCAGTCGAACATATT
TGTAACCTTGCCGATCAGGAAAAACCCAAACTGATGGTGATTGACTCTATTCAAGTAATGCACCTTGCGGATATTCAATC
TTCCCCTGGCAGTGTGGCTCAAGTGCGTGAATGTGCGGCATTTTTGACACGTTATGCCAAAACACGTCAAGTGGCGATTA
TTATGGTCGGCCACGTTACCAAAGATGGAACTTTAGCAGGTCCTAAAGTGCTAGAACACGCCATTGACGCTTCGCTGTTA
TTGGAAGGGGAGGCGGACTCGCGTTATCGTACCTTACGCAGTCAGAAAAACCGTTTCGGAGCAGTGAACGAACTCGGCGT
ATTTGCAATGACAGAACAAGGCTTAAAAGAAGTGAAGAACCCTTCGGCGATCTTCTTAAGCCGTAGCGAAGAACAGACTT
CAGGCAGTTCGGTGATGGTATTATGGGAAGGCACTCGTCCGTTGTTGGTAGAAATTCAGGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGCTTATCACTGTTGCTTGCGGTGTTACATCGACACGG
TGGCTTGCAAATGTCCGACCAAGATGTGTTTGTGAATGTGGTCGGCGGTGTAAAAGTCACTGAAACCAGTGCCGACTTAG
CTCTATTACTGGCACTCATTTCTAGCTTCCTCAATCGTCCGTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTTGGTTTA
GCAGGGGAAATTCGCCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAAGCGGCAAAACACGGCTTTAAGCGTGCGATCAT
TCCTCACGGCAACGCCCCGAAAAAAGCGATTAAGGGAATGGAAGTCTTTACCGTGAAGAAATTAAGTGATGCGTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(84-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.473

99.345

0.472
  radA Streptococcus mitis NCTC 12261

44.812

98.908

0.443
  radA Streptococcus mitis SK321

44.592

98.908

0.441
  radA Streptococcus pneumoniae Rx1

45.921

93.668

0.43
  radA Streptococcus pneumoniae D39

45.921

93.668

0.43
  radA Streptococcus pneumoniae R6

45.921

93.668

0.43
  radA Streptococcus pneumoniae TIGR4

45.921

93.668

0.43