Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   N5898_RS08595 Genome accession   NZ_CP107256
Coordinates   1657853..1658290 (+) Length   145 a.a.
NCBI ID   WP_002868845.1    Uniprot ID   A0A5T0SJ37
Organism   Campylobacter jejuni strain PNUSAC004956     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1652853..1663290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5898_RS08575 (N5898_08575) kdpD 1653344..1655272 (+) 1929 WP_002868847.1 sensor histidine kinase -
  N5898_RS08580 (N5898_08580) uvrB 1655267..1657240 (-) 1974 WP_002868846.1 excinuclease ABC subunit UvrB -
  N5898_RS08585 (N5898_08585) - 1657394..1657624 (+) 231 WP_002852327.1 hypothetical protein -
  N5898_RS08590 (N5898_08590) - 1657614..1657856 (+) 243 WP_002854947.1 hypothetical protein -
  N5898_RS08595 (N5898_08595) Cj0683 1657853..1658290 (+) 438 WP_002868845.1 type II secretion system protein Machinery gene
  N5898_RS08600 (N5898_08600) priA 1658272..1660125 (+) 1854 WP_002868844.1 primosomal protein N' -
  N5898_RS08605 (N5898_08605) cipA 1660135..1661530 (-) 1396 Protein_1662 DUF2972 domain-containing protein -
  N5898_RS08610 (N5898_08610) ispG 1661676..1662749 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16799.78 Da        Isoelectric Point: 8.0993

>NTDB_id=738796 N5898_RS08595 WP_002868845.1 1657853..1658290(+) (Cj0683) [Campylobacter jejuni strain PNUSAC004956]
MNKAFTLLELVFVILILGIFSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=738796 N5898_RS08595 WP_002868845.1 1657853..1658290(+) (Cj0683) [Campylobacter jejuni strain PNUSAC004956]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTTTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0SJ37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993