Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QBL01_RS03015 Genome accession   NZ_CP121769
Coordinates   560328..560933 (-) Length   201 a.a.
NCBI ID   WP_015939588.1    Uniprot ID   B8F5Q8
Organism   Glaesserella parasuis strain Z44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 555328..565933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL01_RS03000 (QBL01_03000) rpiA 556513..557172 (+) 660 WP_160444310.1 ribose-5-phosphate isomerase RpiA -
  QBL01_RS03005 (QBL01_03005) serA 557235..558467 (+) 1233 WP_005712064.1 phosphoglycerate dehydrogenase -
  QBL01_RS03010 (QBL01_03010) pyrG 558583..560217 (-) 1635 WP_160444311.1 CTP synthase (glutamine hydrolyzing) -
  QBL01_RS03015 (QBL01_03015) recR 560328..560933 (-) 606 WP_015939588.1 recombination mediator RecR Machinery gene
  QBL01_RS03020 (QBL01_03020) - 561000..561329 (-) 330 WP_005712069.1 YbaB/EbfC family nucleoid-associated protein -
  QBL01_RS03025 (QBL01_03025) - 561489..562151 (+) 663 WP_021112663.1 pseudouridine synthase -
  QBL01_RS03030 (QBL01_03030) galE 562216..563232 (+) 1017 WP_021111045.1 UDP-glucose 4-epimerase GalE -
  QBL01_RS03035 (QBL01_03035) - 563235..564506 (+) 1272 WP_042905420.1 AmpG family muropeptide MFS transporter -
  QBL01_RS03040 (QBL01_03040) tal 564621..565571 (+) 951 WP_261480915.1 transaldolase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22124.33 Da        Isoelectric Point: 5.8690

>NTDB_id=738796 QBL01_RS03015 WP_015939588.1 560328..560933(-) (recR) [Glaesserella parasuis strain Z44]
MQSSPLLENLMEALRVLPGVGPKSAQRMAYHLLQRNRSGGVNLAKALSEAMTHIGHCKSCRTFTEEDECAICQNYRRQIS
GQLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLEEESFQEVILATNPTIEGDATANYIAEM
CSIHNIKVTRIAHGIPVGSELEMVDGTSLSHSFVGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=738796 QBL01_RS03015 WP_015939588.1 560328..560933(-) (recR) [Glaesserella parasuis strain Z44]
ATGCAAAGTAGCCCTTTACTTGAAAATCTTATGGAAGCCCTGCGTGTATTGCCTGGAGTCGGCCCAAAATCTGCACAACG
TATGGCGTATCATCTTTTACAGCGTAACCGCTCAGGCGGTGTGAATTTAGCTAAAGCATTGAGCGAAGCAATGACTCACA
TTGGACATTGCAAATCTTGCCGAACTTTTACTGAAGAAGATGAGTGTGCTATCTGCCAAAACTACCGCCGCCAAATCAGC
GGACAACTTTGTGTGGTTGAAATGCCTGCAGATATTCAAGCGATTGAACAAACTGGGCAATTTTCAGGGCGTTATTTCGT
ATTAATGGGACATCTATCTCCTTTAGATGGAATAGGACCTCGTGAAATTGGTTTAGATTTATTACAGAAACGCTTAGAAG
AAGAATCTTTTCAAGAAGTGATTCTGGCAACCAATCCAACGATTGAGGGGGATGCGACCGCAAATTATATCGCTGAGATG
TGTTCTATTCACAATATTAAAGTTACTCGTATTGCACACGGTATTCCTGTCGGAAGTGAATTAGAAATGGTTGACGGAAC
AAGCCTTTCTCATTCATTTGTAGGAAGACGGGATATTTCTTTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F5Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

99.005

0.428
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.5

99.502

0.403