Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QBK97_RS09170 Genome accession   NZ_CP121768
Coordinates   1871394..1871999 (+) Length   201 a.a.
NCBI ID   WP_015939588.1    Uniprot ID   B8F5Q8
Organism   Glaesserella parasuis strain d76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1866394..1876999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBK97_RS09145 (QBK97_09145) tal 1866756..1867706 (-) 951 WP_005712077.1 transaldolase -
  QBK97_RS09150 (QBK97_09150) - 1867821..1869092 (-) 1272 WP_075630791.1 AmpG family muropeptide MFS transporter -
  QBK97_RS09155 (QBK97_09155) galE 1869095..1870111 (-) 1017 WP_016527616.1 UDP-glucose 4-epimerase GalE -
  QBK97_RS09160 (QBK97_09160) - 1870176..1870838 (-) 663 WP_021111046.1 pseudouridine synthase -
  QBK97_RS09165 (QBK97_09165) - 1870998..1871327 (+) 330 WP_005712069.1 YbaB/EbfC family nucleoid-associated protein -
  QBK97_RS09170 (QBK97_09170) recR 1871394..1871999 (+) 606 WP_015939588.1 recombination mediator RecR Machinery gene
  QBK97_RS09175 (QBK97_09175) pyrG 1872110..1873744 (+) 1635 WP_021114777.1 CTP synthase (glutamine hydrolyzing) -
  QBK97_RS09180 (QBK97_09180) serA 1873860..1875092 (-) 1233 WP_005712064.1 phosphoglycerate dehydrogenase -
  QBK97_RS09185 (QBK97_09185) rpiA 1875155..1875814 (-) 660 WP_005712062.1 ribose-5-phosphate isomerase RpiA -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22124.33 Da        Isoelectric Point: 5.8690

>NTDB_id=738772 QBK97_RS09170 WP_015939588.1 1871394..1871999(+) (recR) [Glaesserella parasuis strain d76]
MQSSPLLENLMEALRVLPGVGPKSAQRMAYHLLQRNRSGGVNLAKALSEAMTHIGHCKSCRTFTEEDECAICQNYRRQIS
GQLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLEEESFQEVILATNPTIEGDATANYIAEM
CSIHNIKVTRIAHGIPVGSELEMVDGTSLSHSFVGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=738772 QBK97_RS09170 WP_015939588.1 1871394..1871999(+) (recR) [Glaesserella parasuis strain d76]
ATGCAAAGTAGCCCTTTACTTGAAAATCTTATGGAAGCCCTGCGTGTATTGCCTGGAGTCGGCCCAAAATCTGCACAACG
TATGGCGTATCATCTTTTACAGCGTAACCGCTCAGGCGGTGTGAATTTAGCTAAAGCATTGAGCGAAGCAATGACTCACA
TTGGACATTGCAAATCTTGCCGAACTTTTACTGAAGAAGATGAGTGTGCTATCTGCCAAAACTACCGCCGCCAAATCAGC
GGACAACTTTGTGTGGTTGAAATGCCTGCAGATATTCAAGCGATTGAACAAACTGGGCAATTTTCAGGGCGTTATTTCGT
ATTAATGGGACATCTATCTCCTTTAGATGGAATAGGGCCTCGTGAAATTGGTTTAGATTTATTACAGAAACGCTTAGAAG
AAGAATCTTTTCAAGAAGTGATTCTGGCAACCAATCCAACGATTGAGGGGGATGCAACCGCAAATTATATCGCTGAGATG
TGTTCTATTCACAATATTAAAGTTACTCGTATTGCACACGGTATTCCTGTCGGAAGTGAATTAGAAATGGTTGACGGAAC
AAGCCTTTCTCATTCATTTGTAGGAAGACGGGATATTTCTTTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F5Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

99.005

0.428
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.5

99.502

0.403