Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   N5898_RS01895 Genome accession   NZ_CP107256
Coordinates   362880..363611 (+) Length   243 a.a.
NCBI ID   WP_002869050.1    Uniprot ID   A0A5T0SGW6
Organism   Campylobacter jejuni strain PNUSAC004956     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 357880..368611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5898_RS01865 (N5898_01865) rpsF 358026..358403 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  N5898_RS01870 (N5898_01870) ssb 358412..358960 (+) 549 WP_002854048.1 single-stranded DNA-binding protein -
  N5898_RS01875 (N5898_01875) rpsR 358971..359231 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  N5898_RS01880 (N5898_01880) lon 359291..361666 (-) 2376 WP_263908138.1 endopeptidase La -
  N5898_RS01885 (N5898_01885) - 361683..362330 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  N5898_RS01890 (N5898_01890) fliW 362491..362880 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  N5898_RS01895 (N5898_01895) proC 362880..363611 (+) 732 WP_002869050.1 pyrroline-5-carboxylate reductase Machinery gene
  N5898_RS01900 (N5898_01900) ctsT 363608..363910 (+) 303 WP_002855822.1 transformation system protein Machinery gene
  N5898_RS01905 (N5898_01905) - 363907..364569 (+) 663 WP_002866103.1 hypothetical protein -
  N5898_RS01910 (N5898_01910) - 364566..365018 (+) 453 WP_002869049.1 hypothetical protein -
  N5898_RS01915 (N5898_01915) hemD 365015..365644 (-) 630 WP_002856298.1 uroporphyrinogen-III synthase -
  N5898_RS01920 (N5898_01920) thiE 365622..366254 (-) 633 WP_002856400.1 thiamine phosphate synthase -
  N5898_RS01925 (N5898_01925) thiD 366244..367056 (-) 813 WP_002869047.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  N5898_RS01930 (N5898_01930) - 367053..367739 (-) 687 WP_002869046.1 3-methyladenine DNA glycosylase -
  N5898_RS01935 (N5898_01935) - 367736..368497 (-) 762 WP_002856328.1 ATP-binding protein -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26543.96 Da        Isoelectric Point: 8.5934

>NTDB_id=738771 N5898_RS01895 WP_002869050.1 362880..363611(+) (proC) [Campylobacter jejuni strain PNUSAC004956]
MLYILANGAMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=738771 N5898_RS01895 WP_002869050.1 362880..363611(+) (proC) [Campylobacter jejuni strain PNUSAC004956]
ATGCTCTATATACTTGCAAATGGAGCTATGGCAACAGCCTTAGCCTATGGATTAAAAGATGATTATGAAATTTGCATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCAGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAGTGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5T0SGW6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

100

100

1