Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   N3Z32_RS26730 Genome accession   NZ_CP107244
Coordinates   5946650..5948095 (-) Length   481 a.a.
NCBI ID   WP_268080308.1    Uniprot ID   -
Organism   Achromobacter sp. SS2-2022     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5941650..5953095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z32_RS26705 (N3Z32_26725) - 5942170..5942799 (+) 630 WP_268080305.1 LysE family transporter -
  N3Z32_RS26710 (N3Z32_26730) - 5942913..5944520 (+) 1608 WP_268080306.1 peptide chain release factor 3 -
  N3Z32_RS26715 (N3Z32_26735) - 5944545..5945231 (+) 687 WP_268080307.1 hypothetical protein -
  N3Z32_RS26720 (N3Z32_26740) bfr 5945306..5945782 (-) 477 WP_050448876.1 bacterioferritin -
  N3Z32_RS26725 (N3Z32_26745) - 5946247..5946528 (-) 282 WP_050448875.1 (2Fe-2S)-binding protein -
  N3Z32_RS26730 (N3Z32_26750) rpoN/rpoN1 5946650..5948095 (-) 1446 WP_268080308.1 RNA polymerase factor sigma-54 Machinery gene
  N3Z32_RS26735 (N3Z32_26755) - 5948094..5948726 (+) 633 WP_268080309.1 hypothetical protein -
  N3Z32_RS26740 (N3Z32_26760) leuA 5949086..5950798 (+) 1713 WP_268080310.1 2-isopropylmalate synthase -
  N3Z32_RS26745 (N3Z32_26765) - 5950954..5952282 (-) 1329 WP_268080311.1 amidase -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52568.90 Da        Isoelectric Point: 4.8503

>NTDB_id=738751 N3Z32_RS26730 WP_268080308.1 5946650..5948095(-) (rpoN/rpoN1) [Achromobacter sp. SS2-2022]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLDLEAEISQVLADNPLLEREDDTPAAEAQAESERESSVQDDEP
AVERETPVDEMPGSGGVYSDDDSGLPEAARPDTLREHLLGQLMLTRAAPRDAALAALLIDELDENGYLGSPLEEILTWLP
ADMEPDLDELRAALSLLQSFDPPGIGARDMADCLVLQLRHPDLSRLPEAADGAVLACARVICAQHLPVLATGNAARLCAA
VGCDEATFRAAHSLILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQVTLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QTQLQQARWMIRNVEQRFDTILRVAQAIVERQTAFFSQGPSAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPATLRKAQASA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=738751 N3Z32_RS26730 WP_268080308.1 5946650..5948095(-) (rpoN/rpoN1) [Achromobacter sp. SS2-2022]
ATGCAAAATATTGTACCTATGACCCGTCCAATTTTAGAACTGCGACCTGGCCAGCATTTGACGCTGACCCCTCAACTGCA
GCAATCGATACGATTGTTGCAGTTGTCCACGCTCGACCTTGAGGCCGAGATCTCGCAAGTGCTGGCGGACAACCCGCTGC
TGGAGCGTGAAGACGACACCCCCGCCGCCGAGGCGCAAGCCGAATCCGAGCGCGAATCCTCCGTGCAGGACGATGAGCCC
GCGGTAGAGCGCGAGACGCCAGTGGACGAAATGCCCGGCTCGGGCGGGGTCTATTCGGATGATGATTCCGGCCTGCCCGA
GGCGGCGCGCCCCGACACCCTGCGCGAGCATCTGCTGGGCCAATTGATGTTGACTCGGGCCGCCCCGCGTGACGCCGCGC
TGGCTGCGCTGCTGATCGACGAACTGGACGAAAACGGGTATCTGGGGTCGCCGCTAGAGGAAATCCTGACGTGGCTGCCC
GCCGACATGGAGCCGGACCTGGACGAATTGCGCGCTGCGCTGTCCTTGTTGCAGTCGTTCGACCCGCCTGGCATCGGTGC
GCGAGACATGGCCGACTGCCTGGTGTTGCAATTGCGCCATCCCGACCTGTCCCGGTTGCCGGAAGCGGCTGACGGGGCGG
TTTTAGCGTGCGCCCGGGTTATCTGCGCGCAGCATCTGCCCGTACTGGCCACGGGTAACGCCGCTCGCCTTTGCGCCGCC
GTGGGCTGTGACGAGGCGACCTTTCGTGCTGCCCATTCGCTGATCCTGCGGTTGGAACCTCGCCCCGGACGGGCCTGGAC
GGTGCCGGCGGCTGATTACGCCGTGCCGGACGTCATCGTGCGCAAGACCCGGCGCGGGTGGCAAGTCACGCTCAACAGCG
CTGCCGTGCCCCGGTTGCAGATCAACGGCCTGTATGCGCAGATGCTGGGCAACCAGAAGGAATCCGCGCACGCGGGCCTG
CAGACCCAATTGCAGCAAGCCAGATGGATGATCCGCAACGTGGAGCAGCGCTTTGACACGATCCTGCGGGTCGCCCAGGC
GATCGTGGAACGCCAGACCGCGTTCTTCAGCCAGGGGCCGTCAGCTATGCGCCCGTTGATCCTGAAAGACATTGCGGGCG
AGCTCGGATTGCACGAATCGACCATTTCACGGGCTACAACACAGAAGTACATGCTCACTCCGTTCGGCACGCTGGAGCTC
AAGCGCTTCTTCGGCACGGGCGTCTCCACGGACGGCGGCGATGCAACGTCCGCCACGGCGGTGCAGACGTTCATCCGCCA
AATGGTGGCTGAAGAGAACCGTGCCAAGCCCTTGTCCGATAGCCAGATCATGCAGAAACTGGCCGATCAGGGGATAGTCA
TCGCCCGTCGGACGGTGGCAAAGTACCGCGAAGCGCTGCGGATTGCCCCCGCCACGCTGCGCAAGGCACAGGCTAGCGCG
CGTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.713

100

0.511