Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N3Z32_RS08965 Genome accession   NZ_CP107244
Coordinates   1960671..1962032 (+) Length   453 a.a.
NCBI ID   WP_259246228.1    Uniprot ID   A0AA42S630
Organism   Achromobacter sp. SS2-2022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1955671..1967032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N3Z32_RS08940 (N3Z32_08940) - 1955742..1956794 (-) 1053 WP_268082234.1 fumarylacetoacetate hydrolase family protein -
  N3Z32_RS08945 (N3Z32_08945) hpaE 1956992..1958458 (+) 1467 WP_268082235.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  N3Z32_RS08950 (N3Z32_08950) hpaD 1958481..1959332 (+) 852 WP_268082236.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  N3Z32_RS08955 (N3Z32_08955) hpaR 1959340..1959816 (-) 477 WP_268082237.1 homoprotocatechuate degradation operon regulator HpaR -
  N3Z32_RS08960 (N3Z32_08960) - 1959938..1960489 (-) 552 WP_268082238.1 hypothetical protein -
  N3Z32_RS08965 (N3Z32_08965) radA 1960671..1962032 (+) 1362 WP_259246228.1 DNA repair protein RadA Machinery gene
  N3Z32_RS08970 (N3Z32_08970) - 1962082..1962909 (+) 828 WP_268082239.1 sulfite exporter TauE/SafE family protein -
  N3Z32_RS08975 (N3Z32_08975) - 1963140..1963376 (+) 237 WP_268082407.1 hypothetical protein -
  N3Z32_RS08980 (N3Z32_08980) - 1963528..1964484 (-) 957 WP_268082408.1 2-hydroxyacid dehydrogenase -
  N3Z32_RS08985 (N3Z32_08985) - 1964598..1965569 (-) 972 WP_268082240.1 tripartite tricarboxylate transporter substrate binding protein -
  N3Z32_RS08990 (N3Z32_08990) - 1965643..1966644 (-) 1002 WP_268082241.1 tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48091.13 Da        Isoelectric Point: 6.9549

>NTDB_id=738739 N3Z32_RS08965 WP_259246228.1 1960671..1962032(+) (radA) [Achromobacter sp. SS2-2022]
MAKSRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETVESSTPAAAAHRYAPLASASPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSASTNVLYVTGEESAEQVALRARRLDLQTGNVNLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTVYSGELSAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVTTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSIALIPKANAPRQPIDGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=738739 N3Z32_RS08965 WP_259246228.1 1960671..1962032(+) (radA) [Achromobacter sp. SS2-2022]
ATGGCTAAATCCCGAACCGTATATGTGTGCGCCGACTGCGGCGGCACCACCCCCAAGTGGCAGGGCAAATGCCCGCACTG
CAATGCCTGGAACACGCTGGAAGAGACGGTGGAGTCATCCACCCCCGCCGCCGCCGCGCACCGCTACGCGCCGCTGGCCT
CGGCCAGCCCGGTTCGCAGCCTGTCCGAAATCGAAGCCCGCGAAACGCCGCGCCAGCCCACCGGGCTGGACGAGTTCGAC
CGCGTGCTGGGCGGTGGCCTGGTGGCCGGCGCGGTCGTGCTGATCGGGGGCGACCCGGGTATTGGCAAGTCCACGCTGCT
GCTGCAGGCGCTTGCGTCGTTGTCGGCAAGCACCAACGTGCTGTATGTCACCGGCGAGGAATCGGCTGAACAGGTGGCCT
TGCGTGCCCGCCGGCTGGACCTGCAAACCGGCAACGTCAACTTGCTGGCCGAGATCCGGCTGGAAGCCATCCAGGCGGCG
GTGTCGGAACAAAAGCCGACCGTGGCCGTGATCGACTCCATCCAGACCGTGTACAGCGGCGAACTGAGCGCTGCCCCGGG
GTCGGTGTCTCAGGTGCGCGAATGCGCGGCGCAACTCACGCGCCTGGCCAAGCAGACCGGCATCGCCATCGTCATGATCG
GCCACGTCACGAAAGACGGCGCGTTGGCCGGCCCCCGCGTGCTGGAACACATCGTCGACACGGTGCTGTATTTCGAAGGC
GATACGCATTCCTCGTTCCGGCTGGTGCGTGCGTTCAAGAACCGCTTTGGCGCGGTCAACGAATTGGGCGTATTCGCCAT
GACCGACCGCGGCCTGCGCGGCGTGGCCAACCCGTCAGCGCTGTTCCTGTCGCAGCATGAACAACAGGTGGCGGGTTCCT
GTGTGATGGCCACGCAGGAAGGCACGCGTCCGCTGCTGGTCGAGATCCAGGCGCTGGTCGACAGTTCGCACGCGCCCAAC
CCGCGCCGGCTGACGGTGGGCCTGGAAGGCAACCGCTTGGCCATGCTGCTGGCCGTGTTGCACCGGCACGCCGGCGTCAC
CACCTTTGATCAGGACGTGTTCGTCAACGCGGTGGGCGGCGTGCGCATCACCGAGCCCGCGGCGGACTTGCCGGTGCTGC
TGGCCATCATGTCATCGCTGCGCGACAAGCCGCTGCCGCGCGGCCTGATCGCCTTTGGCGAAGTCGGCCTGGCCGGCGAG
ATCCGGCCCGCGCCGCGCGGGCAGGAACGCCTGCGTGAAGCGGCCAAGCTGGGCTTTTCGATTGCGCTGATTCCGAAGGC
CAACGCCCCGCGTCAACCCATCGACGGGCTGGAGATCTGGGCGGTGGACCGCCTGGATGCCGCGTTGGACAAATTGCGCT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.781

100

0.501
  radA Streptococcus pneumoniae Rx1

48.592

94.04

0.457
  radA Streptococcus pneumoniae D39

48.592

94.04

0.457
  radA Streptococcus pneumoniae R6

48.592

94.04

0.457
  radA Streptococcus pneumoniae TIGR4

48.592

94.04

0.457
  radA Streptococcus mitis SK321

48.592

94.04

0.457
  radA Streptococcus mitis NCTC 12261

48.357

94.04

0.455