Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OEG85_RS17225 Genome accession   NZ_CP107241
Coordinates   4027748..4029139 (-) Length   463 a.a.
NCBI ID   WP_023903137.1    Uniprot ID   A0A6V7F8A8
Organism   Xanthomonas hortorum strain Oregano 108     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4022748..4034139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG85_RS17210 (OEG85_17205) - 4023730..4025085 (-) 1356 WP_174556022.1 helix-turn-helix transcriptional regulator -
  OEG85_RS17215 (OEG85_17210) - 4026007..4026792 (+) 786 WP_023903139.1 response regulator transcription factor -
  OEG85_RS17220 (OEG85_17215) - 4026915..4027301 (-) 387 WP_006450581.1 DUF805 domain-containing protein -
  OEG85_RS17225 (OEG85_17220) radA 4027748..4029139 (-) 1392 WP_023903137.1 DNA repair protein RadA Machinery gene
  OEG85_RS17230 (OEG85_17225) - 4029484..4031364 (-) 1881 WP_268212376.1 tetratricopeptide repeat protein -
  OEG85_RS17235 (OEG85_17230) cyoD 4031536..4031871 (-) 336 WP_006450195.1 cytochrome o ubiquinol oxidase subunit IV -
  OEG85_RS17240 (OEG85_17235) cyoC 4031871..4032500 (-) 630 WP_228888520.1 cytochrome o ubiquinol oxidase subunit III -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 48741.99 Da        Isoelectric Point: 7.3522

>NTDB_id=738732 OEG85_RS17225 WP_023903137.1 4027748..4029139(-) (radA) [Xanthomonas hortorum strain Oregano 108]
MAKAKIAYVCGECGAEYNKWQGQCTECGVWNTLSEIVLESATPGGKASPAASRRTGWSGKTEAPKITALKDVRQSEQSRV
STGIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALASMASTLPVLYVTGEESLAQVAGRAVRLDLPLEGLNALAET
GIENILQHASVARPKLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMV
DAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSTQQPGSCVMVTREGTRPLMVEVQAL
VDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAF
GEVGLSGEIRPVPNGEDRLKEAATHGFKRAIVPKANAPKTTSIKGMEIIAVERLSQALEAAAD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=738732 OEG85_RS17225 WP_023903137.1 4027748..4029139(-) (radA) [Xanthomonas hortorum strain Oregano 108]
ATGGCGAAGGCAAAAATAGCCTATGTCTGCGGCGAGTGTGGCGCCGAATACAACAAGTGGCAGGGGCAGTGCACCGAGTG
CGGGGTGTGGAATACGCTCAGCGAAATCGTGCTCGAAAGCGCAACCCCCGGCGGCAAGGCATCGCCGGCGGCTTCGCGCC
GCACCGGTTGGTCGGGCAAGACCGAGGCGCCCAAGATCACCGCGCTCAAGGACGTGCGCCAATCCGAACAGTCGCGCGTG
TCCACCGGCATCGGCGAGTTCGATCGGGTGCTGGGCGGCGGTCTGGTCGAAGGCGCGGTGGTGTTGATCGGTGGCGACCC
CGGCATCGGCAAGTCGACGTTGTTGCTGCAGGCATTGGCCAGCATGGCCAGTACGCTGCCGGTGCTGTACGTGACCGGCG
AAGAATCGCTGGCCCAGGTCGCAGGACGTGCGGTGCGCCTGGATCTGCCGCTGGAAGGCCTGAATGCGCTGGCCGAAACC
GGCATCGAAAATATCCTGCAGCACGCCAGCGTGGCGCGACCGAAGCTGATCGTGGCCGACTCGGTACAGACCTTGTGGAC
CGAATCGCTGACCGCAGCGCCGGGTTCGGTGAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTATGCCAAGGAAA
CCGGCACCGCCGTCTTCCTGGTCGGCCATGTGACCAAGGAAGGCGGCATTGCTGGGCCGCGCGTGCTCGAGCATATGGTC
GATGCGGTGCTGTACTTCGAAGGCGAGAGCGGCAGCCGGTTTCGCTTGCTGCGCGCCTTCAAGAATCGCTTCGGTGCGGT
CAACGAGCTGGGGGTGTTCGCGATGGGCGAGAAGGGCCTCAAGGAGGTCTCCAACCCGTCGGCGATCTTCCTGTCCGGCG
GCAGCACCCAGCAGCCCGGCAGTTGCGTGATGGTTACCCGCGAAGGCACCCGGCCGTTGATGGTGGAAGTACAGGCGCTG
GTGGATGCCTCGCCGTTGTCCAATCCGCGTCGGGTTGCGGTAGGCCTGGAACAGAACCGGCTGGCGATGCTGCTGGCGGT
GCTGCATCGCCATGGCGGCATCGTGGTGGGCGATCAGGACGTATTCGTCAACGTGGTTGGCGGCATCCGCGTGCAGGAAA
CCGCGGCCGATCTGCCGGTGTTGCTGGCAGTGTTGTCCTCGTTGCGCGACCGGCCATTGGCCGAGAAGACGATCGCCTTC
GGCGAGGTGGGGTTGTCCGGCGAGATCCGGCCGGTGCCCAACGGCGAGGATCGCCTGAAAGAAGCCGCCACCCATGGTTT
CAAGCGCGCGATCGTGCCCAAGGCCAATGCACCGAAGACCACCAGCATCAAGGGCATGGAGATCATTGCGGTGGAGCGGC
TGAGCCAGGCCTTGGAAGCGGCGGCTGACTGA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(80-156)

Subunit ChlI of Mg-chelatase (ChlI)

(352-436)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V7F8A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.164

100

0.482
  radA Streptococcus mitis NCTC 12261

43.696

99.352

0.434
  radA Streptococcus pneumoniae Rx1

43.696

99.352

0.434
  radA Streptococcus pneumoniae D39

43.696

99.352

0.434
  radA Streptococcus pneumoniae R6

43.696

99.352

0.434
  radA Streptococcus pneumoniae TIGR4

43.696

99.352

0.434
  radA Streptococcus mitis SK321

43.478

99.352

0.432