Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   QAY87_RS29565 Genome accession   NZ_CP121766
Coordinates   6305989..6307014 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain 22112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6300989..6312014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY87_RS29540 (QAY87_29530) - 6301178..6301495 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  QAY87_RS29545 (QAY87_29535) trkA 6301644..6303017 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  QAY87_RS29550 (QAY87_29540) rsmB 6303044..6304348 (-) 1305 WP_058201336.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QAY87_RS29555 (QAY87_29545) fmt 6304345..6305289 (-) 945 WP_023126788.1 methionyl-tRNA formyltransferase -
  QAY87_RS29560 (QAY87_29550) def 6305344..6305850 (-) 507 WP_003097293.1 peptide deformylase -
  QAY87_RS29565 (QAY87_29555) tsaP 6305989..6307014 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QAY87_RS29570 (QAY87_29560) dprA 6307149..6308237 (+) 1089 WP_022580757.1 DNA-processing protein DprA Machinery gene
  QAY87_RS29575 (QAY87_29565) - 6308278..6308835 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  QAY87_RS29580 (QAY87_29570) - 6308845..6309822 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  QAY87_RS29585 (QAY87_29575) hemF 6310013..6310930 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  QAY87_RS29590 (QAY87_29580) aroE 6310988..6311812 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=738716 QAY87_RS29565 WP_003097294.1 6305989..6307014(+) (tsaP) [Pseudomonas aeruginosa strain 22112]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=738716 QAY87_RS29565 WP_003097294.1 6305989..6307014(+) (tsaP) [Pseudomonas aeruginosa strain 22112]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCACCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCTGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGTGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTACAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393