Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QAY87_RS16960 Genome accession   NZ_CP121766
Coordinates   3588918..3589514 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain 22112     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3583918..3594514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY87_RS16935 (QAY87_16935) - 3584265..3584462 (-) 198 Protein_3350 TetR family transcriptional regulator -
  QAY87_RS16940 (QAY87_16940) - 3584555..3586138 (+) 1584 WP_023436051.1 NAD(P)/FAD-dependent oxidoreductase -
  QAY87_RS16945 (QAY87_16945) - 3586135..3587022 (+) 888 WP_003087246.1 SDR family oxidoreductase -
  QAY87_RS16950 (QAY87_16950) - 3587096..3587635 (+) 540 WP_023436062.1 CbrC family protein -
  QAY87_RS16955 (QAY87_16955) - 3587648..3588796 (-) 1149 WP_023436052.1 acyl-CoA dehydrogenase family protein -
  QAY87_RS16960 (QAY87_16960) recR 3588918..3589514 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  QAY87_RS16965 (QAY87_16965) - 3589593..3589919 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  QAY87_RS16970 (QAY87_16970) dnaX 3589965..3592064 (-) 2100 WP_161773278.1 DNA polymerase III subunit gamma/tau -
  QAY87_RS16975 (QAY87_16975) - 3592101..3592967 (+) 867 WP_023435349.1 ABC transporter substrate-binding protein -
  QAY87_RS16985 (QAY87_16985) - 3593221..3593598 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=738667 QAY87_RS16960 WP_003087237.1 3588918..3589514(-) (recR) [Pseudomonas aeruginosa strain 22112]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=738667 QAY87_RS16960 WP_003087237.1 3588918..3589514(-) (recR) [Pseudomonas aeruginosa strain 22112]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
AATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTACTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAACTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48