Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QAY87_RS06390 Genome accession   NZ_CP121766
Coordinates   1335258..1335587 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 22112     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1330258..1340587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAY87_RS06375 (QAY87_06375) - 1330289..1331307 (+) 1019 Protein_1261 glycosyltransferase family 4 protein -
  QAY87_RS06380 (QAY87_06380) - 1331385..1332505 (+) 1121 Protein_1262 IS3 family transposase -
  QAY87_RS06385 (QAY87_06385) - 1333070..1335067 (+) 1998 WP_010895647.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  QAY87_RS06390 (QAY87_06390) comEA/comE1 1335258..1335587 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  QAY87_RS06400 (QAY87_06400) - 1335804..1337000 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  QAY87_RS06405 (QAY87_06405) uvrB 1337188..1339200 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=738640 QAY87_RS06390 WP_003091430.1 1335258..1335587(+) (comEA/comE1) [Pseudomonas aeruginosa strain 22112]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=738640 QAY87_RS06390 WP_003091430.1 1335258..1335587(+) (comEA/comE1) [Pseudomonas aeruginosa strain 22112]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385