Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OE961_RS00270 Genome accession   NZ_CP107223
Coordinates   52824..55964 (-) Length   1046 a.a.
NCBI ID   WP_263767797.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain H035     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47824..60964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OE961_RS00250 (OE961_00250) - 49380..49769 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  OE961_RS00260 (OE961_00260) - 49932..50311 (-) 380 Protein_49 VOC family protein -
  OE961_RS00265 (OE961_00265) carA 50365..51498 (-) 1134 WP_003687283.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  OE961_RS00270 (OE961_00270) pilC 52824..55964 (-) 3141 WP_263767797.1 PilC family type IV pilus tip adhesin Machinery gene
  OE961_RS00275 (OE961_00275) apbC 57371..58450 (-) 1080 WP_071198195.1 iron-sulfur cluster carrier protein ApbC -
  OE961_RS00285 (OE961_00285) - 58824..59333 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  OE961_RS00290 (OE961_00290) nadR 59674..60114 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -
  OE961_RS00295 (OE961_00295) hpaC 60229..60729 (+) 501 WP_003687298.1 4-hydroxyphenylacetate 3-monooxygenase, reductase component -

Sequence

Protein


Download         Length: 1046 a.a.        Molecular weight: 114275.10 Da        Isoelectric Point: 9.8522

>NTDB_id=738627 OE961_RS00270 WP_263767797.1 52824..55964(-) (pilC) [Neisseria gonorrhoeae strain H035]
MNKTLKRRVFRHTALYAAILMFSHTGGGGAMAQTSNYAIIMNERKQPEVKWEGQYNQSALKDKSRERTFSHTSQKNSLGR
TSNFISFNNNDTLVSQQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIRTTRAGLAGYAYTGIRCGHARDCPKLT
YKTRFSFDNTDLVETRGGLDRHTEPSRDNSPIYKLKDYPWLGVSFNLGAEGTAKDGRSSSRLISSFNEKNSNNNLVYTTE
GRDISLGNWQSESTAVAYYLNAKLHLLDKKEIKDITGKTVRLGVLKPSIDVKTQNTGFAGLLNFWSKWDIKDNGQIPVKL
GLPEVKAGRCTNKPNPNPKSKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTQTDPGKPGRHSLA
ALNAQDIKSREPNFNSRQTVIRLPGGVYRIAPGNSGRVAGINGNDGRNDTFGIYKDRLVTPEADEWSNILLPWTARYYGN
DTPFQTSNKPNNQKKYSQKYRIRTKEDDNDKPRDLGDIVNSPIVAVDGYLATSANDGMVHIFKKTGTDERSYNLKLSYIP
GTMERKDIEGNDSDLAKELRTFAEKGYVGDRYGVDGGFVLRRITDDQDKQKHFFMFGAMGLGGRGAYALDLSKIDSSNLT
GVSMFDVQNDKNNNKNDSNRVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKDIVSSDNTTALYVYDLGNGSGSLIKKIEA
PGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSDSNPDKWSVSTIFEGGKPITSAPAVSRLADKRVVIFGTGSD
LSEEDVVGKDQQYIYGIFDDDKGTGTVKVTVQNGTGGGLLEQTLTKENNTLFLSNNKASGGSNGKGWVVRLREGERVTVK
PIVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDHDSVAQYSGHKKTADGKSVPIGCMWKNGKTA
CPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRLS
WREVFF

Nucleotide


Download         Length: 3141 bp        

>NTDB_id=738627 OE961_RS00270 WP_263767797.1 52824..55964(-) (pilC) [Neisseria gonorrhoeae strain H035]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGCGATGGCGCAAACCAGTAACTACGCTATTATCATGAACGAGCGAAAGCAGCCCGAGGTAAAGTGGGAGGGTC
AATATAATCAATCAGCATTAAAGGACAAAAGCAGGGAGCGGACATTTAGCCATACGAGCCAGAAAAACAGCCTCGGCAGG
ACAAGCAATTTTATCTCATTCAACAATAACGATACCCTTGTTTCTCAACAAAGCGGTACTGCCGTTTTTGGCACAGCCAC
CTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGATTC
GTACCACCCGGGCCGGGCTGGCAGGCTACGCCTACACCGGTATCCGTTGCGGACATGCCCGAGACTGTCCCAAACTTACC
TATAAAACCCGATTTTCCTTCGATAATACCGACTTGGTAGAAACAAGAGGCGGGCTGGATAGGCACACAGAGCCAAGCCG
CGACAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGCCGAGGGTACCGCCA
AAGATGGCAGATCATCCAGCAGATTGATATCTTCTTTTAATGAAAAGAATAGTAATAACAACCTCGTCTATACCACGGAA
GGCCGCGATATTTCCTTGGGCAACTGGCAGAGCGAAAGTACCGCCGTGGCCTATTATCTGAACGCCAAGCTGCACCTGCT
GGACAAAAAAGAGATTAAAGATATCACCGGCAAAACAGTGCGGTTGGGTGTCTTGAAGCCGAGCATCGATGTGAAGACAC
AAAATACGGGGTTTGCCGGCTTGCTAAATTTTTGGTCTAAGTGGGACATTAAAGATAACGGGCAGATTCCGGTCAAGCTC
GGCCTGCCGGAAGTCAAAGCCGGGCGCTGCACCAACAAACCGAACCCCAATCCCAAATCCAAAGCCCCTTCGCCGGCACT
GACCGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCG
GCAGTTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGACCCCGGCAAGCCCGGCCGGCATTCCCTCGCC
GCTTTGAATGCGCAGGATATCAAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTCATCCGATTGCCGGGCGGCGT
GTACCGGATCGCCCCGGGCAATAGCGGCCGGGTCGCGGGTATTAATGGCAATGACGGCAGAAACGACACTTTCGGCATCT
ACAAGGACAGGCTCGTCACACCTGAGGCCGACGAGTGGAGCAACATACTGCTGCCTTGGACGGCTCGGTATTACGGTAAT
GACACTCCATTTCAAACATCCAACAAACCAAACAACCAAAAAAAATACAGCCAAAAATACCGCATCCGCACAAAAGAAGA
TGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATTGTCGCGGTCGACGGGTATCTGGCAACTTCTG
CCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACGGATGAACGCAGCTACAATCTGAAGCTCAGCTACATCCCC
GGTACGATGGAGCGTAAGGATATTGAAGGCAATGACTCCGACCTCGCCAAAGAGCTGCGCACCTTTGCCGAAAAAGGCTA
TGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACCAAGACAAGCAAAAACATTTCT
TTATGTTTGGTGCGATGGGCCTTGGCGGCAGAGGCGCGTATGCCTTGGATTTAAGCAAAATCGACAGCAGCAACCTGACC
GGCGTTTCCATGTTTGATGTCCAAAACGACAAAAATAACAATAAGAATGACAGTAATCGCGTGAAATTAGGCTACACCGT
CGGTACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCTTCCGGTTATGCGGCTAAAGATATTG
TCAGCAGCGATAATACAACCGCGCTGTATGTGTATGATTTGGGAAACGGCAGTGGTAGTCTGATTAAAAAAATCGAAGCA
CCCGGCGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACAGTCGATATCGCCTATGCCGG
CGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCGATTCCAATCCTGATAAATGGTCTGTAAGCACTATTTTCGAAG
GCGGGAAGCCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTTATCTTCGGCACGGGCAGCGAT
TTGAGTGAAGAGGATGTAGTCGGTAAGGATCAACAATATATTTACGGTATCTTTGACGACGATAAGGGGACGGGGACGGT
TAAGGTAACGGTACAAAACGGCACGGGAGGCGGGCTGCTCGAGCAAACGCTTACGAAGGAAAATAACACCTTGTTCCTGA
GCAATAATAAGGCATCCGGCGGATCGAACGGCAAAGGGTGGGTAGTGAGATTGAGGGAAGGAGAACGCGTTACCGTCAAA
CCGATTGTGGTATTGCGTACCGCCTTTGTCACCATCCGCAGCTATACGGGTAATGACAAATGCGGCGCGCAAACCGCCAT
TTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATCACGATTCGGTTG
CGCAATATTCCGGCCATAAGAAAACCGCCGACGGCAAGTCCGTCCCTATAGGCTGTATGTGGAAAAACGGCAAAACCGCC
TGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGATTTCCCCGTCAC
GGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCGGAA
AAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGC
TGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(529-857)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

69.442

100

0.702