Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OGM33_RS15865 Genome accession   NZ_CP107184
Coordinates   3165035..3165664 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain R3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3160035..3170664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM33_RS15850 (OGM33_15825) helD 3160277..3162331 (-) 2055 WP_001295938.1 DNA helicase IV -
  OGM33_RS15855 (OGM33_15830) yccF 3162454..3162900 (+) 447 WP_001261235.1 YccF domain-containing protein -
  OGM33_RS15860 (OGM33_15835) yccS 3162910..3165072 (+) 2163 WP_072190270.1 YccS family putative transporter -
  OGM33_RS15865 (OGM33_15840) sxy/tfoX 3165035..3165664 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  OGM33_RS15870 (OGM33_15845) sulA 3165883..3166392 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  OGM33_RS15875 (OGM33_15850) ompA 3166748..3167800 (+) 1053 WP_305773605.1 porin OmpA -
  OGM33_RS15880 (OGM33_15855) matP 3167876..3168328 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  OGM33_RS15885 (OGM33_15860) ycbZ 3168514..3170274 (+) 1761 WP_000156502.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=738582 OGM33_RS15865 WP_000839151.1 3165035..3165664(-) (sxy/tfoX) [Escherichia coli strain R3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=738582 OGM33_RS15865 WP_000839151.1 3165035..3165664(-) (sxy/tfoX) [Escherichia coli strain R3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995