Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PAFU01_RS20545 Genome accession   NZ_AP019753
Coordinates   4372650..4373195 (-) Length   181 a.a.
NCBI ID   WP_013024173.1    Uniprot ID   A0A8A4K787
Organism   Pantoea ananatis strain FU-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4367650..4378195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAFU01_RS20525 (PAFU01_40310) - 4368675..4369070 (+) 396 WP_014606933.1 transposase -
  PAFU01_RS20530 (PAFU01_40320) - 4370429..4371253 (-) 825 WP_126843279.1 AraC family transcriptional regulator -
  PAFU01_RS20535 (PAFU01_40330) - 4371368..4371886 (+) 519 WP_105079517.1 isochorismatase family protein -
  PAFU01_RS20540 (PAFU01_40340) - 4371983..4372555 (+) 573 WP_265165988.1 DUF1349 domain-containing protein -
  PAFU01_RS20545 (PAFU01_40350) ssb 4372650..4373195 (-) 546 WP_013024173.1 single-stranded DNA-binding protein SSB1 Machinery gene
  PAFU01_RS20550 (PAFU01_40360) uvrA 4373418..4376246 (+) 2829 WP_014595066.1 excinuclease ABC subunit UvrA -
  PAFU01_RS20555 (PAFU01_40370) - 4376469..4376714 (-) 246 WP_072136298.1 TIGR04076 family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19611.52 Da        Isoelectric Point: 5.2456

>NTDB_id=73858 PAFU01_RS20545 WP_013024173.1 4372650..4373195(-) (ssb) [Pantoea ananatis strain FU-01]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGENKEITEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWQDQGGQERYTTEVVVNVGGTMQMLGGRQQGGNAPAAGGGQGNNNGWGQPQQPQQANNNQFSGGAQSRPQQQ
PSAPASNNNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=73858 PAFU01_RS20545 WP_013024173.1 4372650..4373195(-) (ssb) [Pantoea ananatis strain FU-01]
ATGGCCAGTCGTGGCGTTAACAAAGTGATTCTTGTCGGGAATCTGGGTCAGGATCCGGAAGTACGTTACATGCCAAATGG
TGGCGCTGTCGCCAACATTACGCTGGCTACGTCGGAAAGCTGGCGCGATAAGCAGACCGGTGAAAACAAAGAAATCACCG
AATGGCACCGTGTCGTGCTGTTTGGCAAGCTGGCGGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGAACGTTACACCACCGAAGTCGTGGTTAACGTCGG
CGGCACCATGCAAATGCTGGGTGGACGTCAGCAGGGCGGTAACGCGCCAGCAGCAGGCGGCGGCCAGGGCAACAACAACG
GTTGGGGCCAGCCTCAGCAACCGCAGCAGGCGAACAACAACCAGTTTAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGCAG
CCAAGCGCACCTGCCAGCAACAACAATGAACCACCGATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.283

100

0.735
  ssb Glaesserella parasuis strain SC1401

57.812

100

0.613
  ssb Neisseria meningitidis MC58

46.154

100

0.464
  ssb Neisseria gonorrhoeae MS11

46.154

100

0.464

Multiple sequence alignment