Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QBE57_RS04370 Genome accession   NZ_CP121670
Coordinates   881075..882811 (-) Length   578 a.a.
NCBI ID   WP_171935673.1    Uniprot ID   -
Organism   Streptococcus suis strain HBXY-SL     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 876075..887811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS04355 - 876926..878212 (-) 1287 WP_171935676.1 homoserine dehydrogenase -
  QBE57_RS04360 - 878317..879240 (+) 924 WP_171935675.1 polysaccharide deacetylase family protein -
  QBE57_RS04365 rcrQ 879297..881066 (-) 1770 WP_171935674.1 ABC transporter ATP-binding protein Regulator
  QBE57_RS04370 rcrP 881075..882811 (-) 1737 WP_171935673.1 ABC transporter ATP-binding protein Regulator
  QBE57_RS04375 - 882887..883129 (-) 243 WP_012028079.1 KH domain-containing protein -
  QBE57_RS04380 rpsP 883151..883423 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  QBE57_RS04385 - 883548..883856 (-) 309 WP_161950714.1 DUF4298 domain-containing protein -
  QBE57_RS04390 pcp 883856..884503 (-) 648 WP_044758848.1 pyroglutamyl-peptidase I -
  QBE57_RS04395 - 884539..885255 (-) 717 WP_171935690.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65087.40 Da        Isoelectric Point: 5.2936

>NTDB_id=738566 QBE57_RS04370 WP_171935673.1 881075..882811(-) (rcrP) [Streptococcus suis strain HBXY-SL]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVGQLYYWAGMMGLIVLLGIVGRITLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFAEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVIVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALAPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLSELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTEHATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=738566 QBE57_RS04370 WP_171935673.1 881075..882811(-) (rcrP) [Streptococcus suis strain HBXY-SL]
ATGAATCTGATTTGGACCTACTTAAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTAGGGGCCTTCTTATTTGTAGT
GGTAAACTTGGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAAAATGATGTTGGCCAGCTCTATT
ACTGGGCGGGAATGATGGGCTTGATCGTCTTGCTTGGAATTGTTGGACGAATAACGCTTGCCTATGCAGCTGGAAAATTA
ACTACCAATATCGTCAAAGATATTCGAAATGATTTGTACGAGAAAATTCAGGACTACTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTGGTTGCTCGTATGACCAATGATGCTTTTGTCTTGATGCAGTTTGCGGAGATGGTATTGAAGCTGG
GAATTATCACTCCCTTGATGATGATTGCCTCTGTCATTATGACCTTGGTAACCAGTCCGAGTCTAGCTTGGACAGTTGCA
GTAGCCATGCCGTTTCTCGTTATCGTTATTTTCTATGTAGCAACCAAAACCCGTCCTCTTTCTGAAAAGCAACAAAAACG
TTTGGATACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTACGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAACTCTTTAATCTGACTGGTCTGACAGAA
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTCGCATTGGCTCCTTTGCAAACAGGTAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCCGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GATGGGATTACTGAAACAGACACTCGTGGTTATTTGGAATTTGAAAATGTAACCTTTGCCTACCCTGGTGAAACGGAATC
ACCTGTTCTGCACAATATTTCATTTAAGGCAAAGCCTGGAGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCAGAAAA
CCTCAAGTACGGTAAGATGGATGCTAGTCTTTCTGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAGAAGTTTGACACCCATCTAGCAGAAGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCGCGTGCCATTGTCAAACAGCCAGACATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
GATTTTGAGGAGTCGTCTGAAGGAAGTGACGGAACATGCGACGGTGCTGATTGTTGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGTCGTGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38

100

0.394