Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QBE57_RS04365 Genome accession   NZ_CP121670
Coordinates   879297..881066 (-) Length   589 a.a.
NCBI ID   WP_171935674.1    Uniprot ID   -
Organism   Streptococcus suis strain HBXY-SL     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 874297..886066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBE57_RS04345 murB 874919..875827 (-) 909 WP_024406308.1 UDP-N-acetylmuramate dehydrogenase -
  QBE57_RS04350 thrB 876062..876922 (-) 861 WP_002938588.1 homoserine kinase -
  QBE57_RS04355 - 876926..878212 (-) 1287 WP_171935676.1 homoserine dehydrogenase -
  QBE57_RS04360 - 878317..879240 (+) 924 WP_171935675.1 polysaccharide deacetylase family protein -
  QBE57_RS04365 rcrQ 879297..881066 (-) 1770 WP_171935674.1 ABC transporter ATP-binding protein Regulator
  QBE57_RS04370 rcrP 881075..882811 (-) 1737 WP_171935673.1 ABC transporter ATP-binding protein Regulator
  QBE57_RS04375 - 882887..883129 (-) 243 WP_012028079.1 KH domain-containing protein -
  QBE57_RS04380 rpsP 883151..883423 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  QBE57_RS04385 - 883548..883856 (-) 309 WP_161950714.1 DUF4298 domain-containing protein -
  QBE57_RS04390 pcp 883856..884503 (-) 648 WP_044758848.1 pyroglutamyl-peptidase I -
  QBE57_RS04395 - 884539..885255 (-) 717 WP_171935690.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65630.66 Da        Isoelectric Point: 5.5749

>NTDB_id=738565 QBE57_RS04365 WP_171935674.1 879297..881066(-) (rcrQ) [Streptococcus suis strain HBXY-SL]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDMANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFSQIT
AGLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLAGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTASLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=738565 QBE57_RS04365 WP_171935674.1 879297..881066(-) (rcrQ) [Streptococcus suis strain HBXY-SL]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACAAATCTTCTGTATTTTTAGCTGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAACCCTTTGTATTGGGGCTTATCATCACAGAATTGACCAAGAATCTGT
TGGATATGGCAAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTGCGT
GCTCTTCTATATGAAATCGGTGCCTATGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACCAAGGAACTACG
TCAGGACTTGAGTCACAAGATTAACAAGATTCCTGTTTCTTATTTTGACAAGCACCAGTATGGTGATTTGCTAGGTCGTT
TTACAAGCGATGTGGAGACTGTGTCGAATGCTCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACTCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTCGTAGTCGTAACTTTGGTTCCAGTGACCTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAGCCTTATTTCAAGCAACAGGCTGATGCCCTAGGTCGATTGAACGGCTTTGTCC
AAGAAAATCTGACAGGTTTTAACGTTCTCAAACTCTACGGTCGTGAAGAAATTTCTACAGAAGAATTTAGCCAGATTACC
GCAGGTTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCAGGCTTGCTCATGCCCCTGGTACACGGCTTATCGAACAT
TGCCTATGTAGTCGTGGCCTTACTTGCTGGTCTGAAAGTTCTTGCAGGTACATTGACAGTTGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAGTTGGCACCCCAGTTGCAGTCTGCTAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCGCTAGAGTTGACAGCTAGTCTGACCGG
ACAAGTCAGCTTTGAACAGGTTGAATTTGGCTATTCAGAAGATAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACAGGGGCTGGTAAGACAACCCTCATCAACCTTCTCATGCGTTTCTATGAT
GTCACATCCGGTGCTATCAAGGTGGATGGTCAGGATATTCGGAATATTTCTCGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGATTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCCAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCGGATCCTGCCATTCT
GATTCTTGACGAAGCAACTTCTTCAGTTGATACTCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCCCACCGTTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAGGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGATAAAGGTTTCTATTATAATCTTTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.559

100

0.436