Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OGM34_RS15850 Genome accession   NZ_CP107182
Coordinates   3153782..3154411 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain R4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3148782..3159411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM34_RS15835 (OGM34_15820) helD 3149024..3151078 (-) 2055 WP_001295938.1 DNA helicase IV -
  OGM34_RS15840 (OGM34_15825) yccF 3151201..3151647 (+) 447 WP_001261235.1 YccF domain-containing protein -
  OGM34_RS15845 (OGM34_15830) yccS 3151657..3153819 (+) 2163 WP_000875041.1 YccS family putative transporter -
  OGM34_RS15850 (OGM34_15835) sxy/tfoX 3153782..3154411 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  OGM34_RS15855 (OGM34_15840) sulA 3154630..3155139 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  OGM34_RS15860 (OGM34_15845) ompA 3155495..3156547 (+) 1053 WP_001346420.1 porin OmpA -
  OGM34_RS15865 (OGM34_15850) matP 3156623..3157075 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  OGM34_RS15870 (OGM34_15855) ycbZ 3157261..3159021 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=738552 OGM34_RS15850 WP_000839151.1 3153782..3154411(-) (sxy/tfoX) [Escherichia coli strain R4]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=738552 OGM34_RS15850 WP_000839151.1 3153782..3154411(-) (sxy/tfoX) [Escherichia coli strain R4]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995