Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OGM40_RS23075 Genome accession   NZ_CP107155
Coordinates   4754921..4755550 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain R11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4749921..4760550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM40_RS23055 (OGM40_23020) ycbZ 4750311..4752071 (-) 1761 WP_000156502.1 Lon protease family protein -
  OGM40_RS23060 (OGM40_23025) matP 4752257..4752709 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  OGM40_RS23065 (OGM40_23030) ompA 4752785..4753837 (-) 1053 WP_001346420.1 porin OmpA -
  OGM40_RS23070 (OGM40_23035) sulA 4754193..4754702 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  OGM40_RS23075 (OGM40_23040) sxy/tfoX 4754921..4755550 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  OGM40_RS23080 (OGM40_23045) yccS 4755513..4757675 (-) 2163 WP_000875041.1 YccS family putative transporter -
  OGM40_RS23085 (OGM40_23050) yccF 4757685..4758131 (-) 447 WP_001261235.1 YccF domain-containing protein -
  OGM40_RS23090 (OGM40_23055) helD 4758254..4760308 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=738429 OGM40_RS23075 WP_000839151.1 4754921..4755550(+) (sxy/tfoX) [Escherichia coli strain R11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=738429 OGM40_RS23075 WP_000839151.1 4754921..4755550(+) (sxy/tfoX) [Escherichia coli strain R11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995