Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   MTS17_RS16870 Genome accession   NZ_CP121625
Coordinates   3453467..3453829 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain JAB144     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3448467..3458829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTS17_RS16835 (MTS17_16835) - 3448770..3448771 (-) 2 WP_085947913.1 IS4-like element ISAba1 family transposase -
  MTS17_RS16840 (MTS17_16840) - 3449353..3449745 (+) 393 WP_002017443.1 type IIL restriction-modification enzyme MmeI -
  MTS17_RS16845 (MTS17_16845) - 3449753..3450208 (+) 456 Protein_3279 DEAD/DEAH box helicase family protein -
  MTS17_RS16850 (MTS17_16850) - 3450208..3450867 (+) 660 Protein_3280 ATP-binding protein -
  MTS17_RS16855 (MTS17_16855) - 3450972..3451793 (-) 822 WP_001046004.1 OXA-23 family carbapenem-hydrolyzing class D beta-lactamase OXA-23 -
  MTS17_RS16860 (MTS17_16860) - 3451899..3452989 (+) 1091 WP_087486612.1 IS4-like element ISAba1 family transposase -
  MTS17_RS16865 (MTS17_16865) pilG 3453060..3453443 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  MTS17_RS16870 (MTS17_16870) pilH 3453467..3453829 (+) 363 WP_000101096.1 response regulator Machinery gene
  MTS17_RS16875 (MTS17_16875) - 3453890..3454426 (+) 537 WP_000729757.1 chemotaxis protein CheW -
  MTS17_RS16880 (MTS17_16880) - 3454473..3456551 (+) 2079 WP_283059956.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=738378 MTS17_RS16870 WP_000101096.1 3453467..3453829(+) (pilH) [Acinetobacter baumannii strain JAB144]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=738378 MTS17_RS16870 WP_000101096.1 3453467..3453829(+) (pilH) [Acinetobacter baumannii strain JAB144]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392