Detailed information NTG0737979

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: OD347_RS18030
• Genome accession: NZ_CP107079
• Coordinates: 3557423..3558568 (+)
• Length: 381 a.a.
• NCBI ID: WP_088613621.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain LT-2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3552423..3563568

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OD347_RS18010	argS	3553086..3554756 (-)	1671	WP_065522434.1	arginine--tRNA ligase	-
OD347_RS18015	-	3554753..3555181 (-)	429	WP_016937596.1	DUF1934 domain-containing protein	-
OD347_RS18020	-	3555335..3555794 (+)	460	Protein_3498	bacteriocin biosynthesis protein AlbG	-
OD347_RS18025	-	3555800..3557194 (-)	1395	WP_065522435.1	YncE family protein	-
OD347_RS18030	rapF	3557423..3558568 (+)	1146	WP_088613621.1	tetratricopeptide repeat protein	Regulator
OD347_RS18035	phrF	3558552..3558671 (+)	120	WP_014471166.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
OD347_RS18040	speB	3558785..3559657 (-)	873	WP_088613622.1	agmatinase	-
OD347_RS18045	speE	3559716..3560546 (-)	831	WP_013353957.1	spermidine synthase	-
OD347_RS18050	-	3560746..3562818 (+)	2073	WP_088613623.1	transglycosylase domain-containing protein	-
OD347_RS18055	-	3562843..3563274 (-)	432	WP_088613624.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45574.61 Da
• Isoelectric Point: 4.6479

>NTDB_id=737979 OD347_RS18030 WP_088613621.1 3557423..3558568(+) (rapF) [Bacillus velezensis strain LT-2]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELEHAEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVTDQIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAKEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLKDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=737979 OD347_RS18030 WP_088613621.1 3557423..3558568(+) (rapF) [Bacillus velezensis strain LT-2]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATTAAAGAAGAGCTTGAGCATGCAGAAGATGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAATTGACGTACG
TTACAGATCAGATAGAAAAAGCGGAATTTTACTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGGCTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATCAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTTCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGGCAATATCATGACAAAGGAGTATCTTACGCGAAGG
AGGCGGAAGATTCATTATATATAGTGGAGTATGAATTTTTAGAATCTTTGTACGTCGGTGAGCCTGATGAAGAAGCAATT
ATGGAATGTTTTGACTTCCTCAAGGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
CCACGAGAGAGAAAACTTCGAGAAGGCTTCCGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAAATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (189-253)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.215	100	0.782
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572