Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   OD347_RS13195 Genome accession   NZ_CP107079
Coordinates   2617975..2618727 (-) Length   250 a.a.
NCBI ID   WP_088613207.1    Uniprot ID   -
Organism   Bacillus velezensis strain LT-2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2612975..2623727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS13170 mreC 2613410..2614273 (-) 864 WP_013353061.1 rod shape-determining protein MreC -
  OD347_RS13175 mreB 2614304..2615317 (-) 1014 WP_013353062.1 cell shape-determining protein MreB -
  OD347_RS13180 radC 2615409..2616104 (-) 696 WP_013353063.1 DNA repair protein RadC -
  OD347_RS13185 - 2616136..2616705 (-) 570 WP_065522626.1 nucleoside triphosphate pyrophosphatase -
  OD347_RS13190 - 2616847..2617848 (-) 1002 WP_088613206.1 SPOR domain-containing protein -
  OD347_RS13195 comC 2617975..2618727 (-) 753 WP_088613207.1 A24 family peptidase Machinery gene
  OD347_RS13200 - 2618867..2620159 (-) 1293 WP_088613208.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  OD347_RS13205 - 2620218..2622860 (-) 2643 WP_088613209.1 valine--tRNA ligase -
  OD347_RS13210 - 2623311..2623502 (+) 192 WP_013353069.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26897.56 Da        Isoelectric Point: 9.0703

>NTDB_id=737963 OD347_RS13195 WP_088613207.1 2617975..2618727(-) (comC) [Bacillus velezensis strain LT-2]
MLLILFLLGLIFGSFFYTAACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYVLQKGRCRNCRGKLSIMYPAAECWTA
CLFTAAGIHLGFSRELLVALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLLIVGRIFSPLDSWYAGFAGAVCGFFLLIFI
MFVSKGGIGAGDVKLFGVIGLVLGVKLVLIAFFLSVIFGAVYGMCAAAGGRLGKKQPFPFAPAIAAGSAVSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=737963 OD347_RS13195 WP_088613207.1 2617975..2618727(-) (comC) [Bacillus velezensis strain LT-2]
GTGCTTTTGATTCTGTTTTTGCTCGGTTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGCTCATCCTGTTCCTTTTGCGGCCTGCCGCTCTCCTGGGGTGAGCTGGTGCCCGTCGTTTCTT
ATGTCCTGCAAAAAGGGAGATGCAGAAACTGTCGTGGGAAGCTGTCGATTATGTATCCGGCGGCAGAATGCTGGACGGCA
TGTTTATTTACGGCTGCCGGTATTCATCTCGGTTTCTCAAGAGAACTGTTAGTGGCGCTTTTATTTCTGTCTCTATTAAT
GATTGTTACCGTGACAGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTGCCGCTTCTCATCGTCG
GCCGTATTTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTGATTTTTATT
ATGTTTGTCAGTAAAGGAGGCATCGGTGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTTGTGCTCGGCGTGAAGCT
CGTACTCATTGCATTCTTTCTTTCCGTTATATTCGGAGCCGTATACGGGATGTGCGCCGCAGCGGGCGGCAGGCTTGGAA
AAAAGCAGCCTTTCCCGTTTGCGCCCGCCATCGCGGCCGGGAGCGCTGTGAGTTATTTATACGGTGAAGAACTGTTTTCG
TTTTACATCAAACTCGCTTCCGGAGGAGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

59.274

99.2

0.588