Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   OD347_RS12400 Genome accession   NZ_CP107079
Coordinates   2469478..2470245 (-) Length   255 a.a.
NCBI ID   WP_071347996.1    Uniprot ID   A0AAP7TAR4
Organism   Bacillus velezensis strain LT-2     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2464478..2475245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS12380 - 2464680..2465492 (-) 813 WP_013352914.1 pyruvate, water dikinase regulatory protein -
  OD347_RS12385 ccpN 2465518..2466156 (-) 639 WP_014470676.1 transcriptional regulator CcpN -
  OD347_RS12390 glyS 2466257..2468296 (-) 2040 WP_088613134.1 glycine--tRNA ligase subunit beta -
  OD347_RS12395 glyQ 2468289..2469176 (-) 888 WP_071347997.1 glycine--tRNA ligase subunit alpha -
  OD347_RS12400 recO 2469478..2470245 (-) 768 WP_071347996.1 DNA repair protein RecO Machinery gene
  OD347_RS12405 - 2470282..2470425 (-) 144 WP_007408286.1 YqzL family protein -
  OD347_RS12410 era 2470580..2471485 (-) 906 WP_014470680.1 GTPase Era -
  OD347_RS12415 - 2471466..2471876 (-) 411 WP_045510514.1 cytidine deaminase -
  OD347_RS12420 - 2471999..2472373 (-) 375 WP_088613135.1 diacylglycerol kinase family protein -
  OD347_RS12425 ybeY 2472354..2472827 (-) 474 WP_088613136.1 rRNA maturation RNase YbeY -
  OD347_RS12430 - 2472828..2474960 (-) 2133 WP_088613137.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29272.93 Da        Isoelectric Point: 8.7962

>NTDB_id=737956 OD347_RS12400 WP_071347996.1 2469478..2470245(-) (recO) [Bacillus velezensis strain LT-2]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFGKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=737956 OD347_RS12400 WP_071347996.1 2469478..2470245(-) (recO) [Bacillus velezensis strain LT-2]
ATGCTGACAAAATGTGAAGGAATCGTGCTTCGTACGAATGACTACGGAGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTTATGGCAAGAGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTGACGGCATATGCCGCTTTTATCGCTGAACTTACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCAAGACGGG
ACGTTTCATTTTTCGGTAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTTATTGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.588

100

0.906