Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OD347_RS11905 Genome accession   NZ_CP107079
Coordinates   2386686..2388416 (-) Length   576 a.a.
NCBI ID   WP_071348031.1    Uniprot ID   A0AAP7TAP3
Organism   Bacillus velezensis strain LT-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2381686..2393416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS11880 - 2382044..2382256 (+) 213 WP_014470647.1 spore germination protein -
  OD347_RS11885 - 2382381..2382593 (+) 213 WP_013352823.1 spore germination protein -
  OD347_RS11890 alr 2382779..2383960 (+) 1182 WP_088613099.1 alanine racemase -
  OD347_RS11895 spo0A 2384161..2384961 (-) 801 WP_045510705.1 sporulation transcription factor Spo0A Regulator
  OD347_RS11900 spoIVB 2385242..2386522 (-) 1281 WP_088613100.1 SpoIVB peptidase -
  OD347_RS11905 recN 2386686..2388416 (-) 1731 WP_071348031.1 DNA repair protein RecN Machinery gene
  OD347_RS11910 ahrC 2388448..2388897 (-) 450 WP_013352828.1 transcriptional regulator AhrC/ArgR -
  OD347_RS11915 - 2388994..2389839 (-) 846 WP_013352829.1 TlyA family RNA methyltransferase -
  OD347_RS11920 dxs 2389836..2391737 (-) 1902 WP_045510685.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OD347_RS11925 - 2391880..2392770 (-) 891 WP_045510682.1 polyprenyl synthetase family protein -
  OD347_RS11930 - 2392760..2393014 (-) 255 WP_013352832.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64018.89 Da        Isoelectric Point: 4.7614

>NTDB_id=737947 OD347_RS11905 WP_071348031.1 2386686..2388416(-) (recN) [Bacillus velezensis strain LT-2]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYREGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLETLKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSAGEAPIVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKELKDGRTTTHVTPLSQQDKVAEIGRMIAGVEVTDLTKR
HAKELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=737947 OD347_RS11905 WP_071348031.1 2386686..2388416(-) (recN) [Bacillus velezensis strain LT-2]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGAGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGGCTGTTTCTTTTAGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTAACGATCGCGGCTTTAAGGGAGATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAGGACGACAAGCATTTAGAGCTTTTAGATAAATTTGCGGGCGCTGAGGCCGAATCAGCGCTTCAG
GCTTACCGTGAAGGCTATGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAGAGCGAGCAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCGGCTAAGCTTGAATTGAATGAAGACGAGCTTCTTC
AGGAAGAACGGAAGCAAATATCCAACTTTGAGAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGTGAG
CAGGGGGGTCTCGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCCGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAAGATGCGACCTTTCAGATGCGCAATCTGTTAGATGATCTGGAAT
ATGATCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGCAAATACGGAGCGACAGTA
GAAGACATTCTGGAATACGGCTCAAAAATAGAAGAGGAAATTGATCAAATCGAGAACCGTGACAGCCACCTTGAAACGCT
GAAGAAGGAACTGGAGTCCGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAACTTATCAAAAATCAGAAAAGCATGGGCCA
AAAAACTGGCTGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCTACGTTTGATACGGAATTCCTCGTG
AAGACCGATCCGTCAGCCGGTGAAGCGCCGATTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGTATTGACCTTGT
GAAATTTTTAATTTCAACAAATACCGGGGAGCCGCTCAAGCCGCTGTCAAAGGTTGCGTCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGATAAAAAGTATTTTTTCTTCCCAGCAGGATGTCACTTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCGCAGGCCATCGCGGAAAAAATCCATAAAGTATCTACCGGTTCACAGGTGCTCTGCATTACACATCT
CCCGCAGGTTGCCGCCATGGCGGACACGCACCTTTTGATCGCGAAAGAATTAAAAGACGGTCGGACGACAACGCATGTCA
CGCCGCTTTCCCAGCAGGACAAGGTAGCGGAAATCGGCCGCATGATTGCGGGCGTCGAAGTGACAGATCTGACAAAACGG
CATGCAAAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.236

100

0.892