Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OD347_RS07865 Genome accession   NZ_CP107079
Coordinates   1485040..1485324 (+) Length   94 a.a.
NCBI ID   WP_013352109.1    Uniprot ID   A0AAP7NBF5
Organism   Bacillus velezensis strain LT-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1480040..1490324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS07845 - 1481289..1482197 (+) 909 WP_088612741.1 ketopantoate reductase family protein -
  OD347_RS07850 - 1482226..1483458 (-) 1233 WP_088612742.1 aminopeptidase -
  OD347_RS07855 - 1483559..1483693 (-) 135 WP_013352107.1 protein YkpC -
  OD347_RS07860 mreBH 1483764..1484771 (-) 1008 WP_013352108.1 cell shape-determining protein MreBH -
  OD347_RS07865 abrB 1485040..1485324 (+) 285 WP_013352109.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  OD347_RS07870 - 1485497..1486801 (+) 1305 WP_088612743.1 ATP-binding protein -
  OD347_RS07875 - 1486803..1487630 (+) 828 WP_088612744.1 gamma-glutamylcyclotransferase -
  OD347_RS07880 ktrC 1487671..1488336 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  OD347_RS07885 ade 1488486..1490219 (+) 1734 WP_088612745.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10542.41 Da        Isoelectric Point: 5.2168

>NTDB_id=737939 OD347_RS07865 WP_013352109.1 1485040..1485324(+) (abrB) [Bacillus velezensis strain LT-2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPDNQEYGNGKIILSPEGAK
MLLEEIEEALKDKS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=737939 OD347_RS07865 WP_013352109.1 1485040..1485324(+) (abrB) [Bacillus velezensis strain LT-2]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAACTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAACCGCACGGCATTT
GCTTAATGACCGGAGAAATTACCCCTGATAATCAGGAGTACGGCAACGGTAAAATCATCTTAAGCCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCATTAAAAGATAAATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

97.872

0.553