Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   OD347_RS05825 Genome accession   NZ_CP107079
Coordinates   1117254..1117832 (+) Length   192 a.a.
NCBI ID   WP_013351744.1    Uniprot ID   -
Organism   Bacillus velezensis strain LT-2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112254..1122832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS19805 - 1112754..1113269 (-) 516 WP_373418731.1 methyl-accepting chemotaxis protein -
  OD347_RS19810 - 1113513..1114046 (-) 534 Protein_1085 protoglobin domain-containing protein -
  OD347_RS05810 - 1114169..1115692 (-) 1524 WP_088612539.1 FAD-dependent oxidoreductase -
  OD347_RS05815 - 1115818..1116675 (+) 858 WP_013351742.1 SDR family oxidoreductase -
  OD347_RS05820 - 1116705..1116938 (-) 234 WP_013351743.1 IDEAL domain-containing protein -
  OD347_RS05825 comK 1117254..1117832 (+) 579 WP_013351744.1 competence protein ComK Regulator
  OD347_RS05830 - 1117978..1118349 (+) 372 WP_088612540.1 iron chaperone -
  OD347_RS05835 eis 1118385..1119596 (-) 1212 WP_088612541.1 enhanced intracellular survival protein Eis -
  OD347_RS05840 - 1119751..1120461 (-) 711 WP_088612542.1 YrpD family protein -
  OD347_RS05845 - 1120657..1120926 (+) 270 WP_013351748.1 excalibur calcium-binding domain-containing protein -
  OD347_RS05850 - 1120958..1121269 (-) 312 WP_088612543.1 YbjQ family protein -
  OD347_RS05855 - 1121311..1122780 (-) 1470 WP_088612544.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22287.57 Da        Isoelectric Point: 8.1411

>NTDB_id=737926 OD347_RS05825 WP_013351744.1 1117254..1117832(+) (comK) [Bacillus velezensis strain LT-2]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=737926 OD347_RS05825 WP_013351744.1 1117254..1117832(+) (comK) [Bacillus velezensis strain LT-2]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCAAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCAGCAAGGCCTCAATGCGGCTGGATATCTCA
CGTGCACGTTAAAGATTTTCAGCCGACCGCATTCGATGACACGGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTACCATTCTTTTGAAAACCAAGTCTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTACCCGAAAGAAGAGCGGACAAAAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828