Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   OD347_RS00250 Genome accession   NZ_CP107079
Coordinates   45614..45904 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain LT-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40614..50904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS00210 darA 40631..40960 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  OD347_RS00215 - 40973..41413 (+) 441 WP_045513461.1 YaaR family protein -
  OD347_RS00220 holB 41425..42414 (+) 990 WP_065521834.1 DNA polymerase III subunit delta' -
  OD347_RS00225 ricT 42417..43244 (+) 828 WP_013350747.1 competence/sporulation regulator complex protein RicT -
  OD347_RS00230 yabA 43259..43618 (+) 360 WP_013350748.1 replication initiation-control protein YabA -
  OD347_RS00235 - 43679..44422 (+) 744 WP_088612030.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  OD347_RS00240 - 44409..44708 (+) 300 WP_088612031.1 GIY-YIG nuclease family protein -
  OD347_RS00245 rsmI 44683..45564 (+) 882 WP_088612032.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  OD347_RS00250 abrB 45614..45904 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  OD347_RS00255 metG 46387..48378 (+) 1992 WP_014469597.1 methionine--tRNA ligase -
  OD347_RS00260 - 48455..49222 (+) 768 WP_014469598.1 TatD family hydrolase -
  OD347_RS00265 - 49357..50676 (+) 1320 WP_088612033.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=737910 OD347_RS00250 WP_169510469.1 45614..45904(-) (abrB) [Bacillus velezensis strain LT-2]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=737910 OD347_RS00250 WP_169510469.1 45614..45904(-) (abrB) [Bacillus velezensis strain LT-2]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979