Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OD347_RS00020 Genome accession   NZ_CP107079
Coordinates   3030..4142 (+) Length   370 a.a.
NCBI ID   WP_013350724.1    Uniprot ID   A0AAE2NV61
Organism   Bacillus velezensis strain LT-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OD347_RS00005 dnaA 1..1341 (+) 1341 WP_013350722.1 chromosomal replication initiator protein DnaA -
  OD347_RS00010 dnaN 1527..2663 (+) 1137 WP_014469588.1 DNA polymerase III subunit beta -
  OD347_RS00015 rlbA 2799..3014 (+) 216 WP_004392910.1 ribosome maturation protein RlbA -
  OD347_RS00020 recF 3030..4142 (+) 1113 WP_013350724.1 DNA replication/repair protein RecF Machinery gene
  OD347_RS00025 remB 4160..4405 (+) 246 WP_004392908.1 extracellular matrix regulator RemB -
  OD347_RS00030 gyrB 4462..6378 (+) 1917 WP_088613804.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OD347_RS00035 gyrA 6595..9054 (+) 2460 WP_013350726.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42414.36 Da        Isoelectric Point: 7.0883

>NTDB_id=737908 OD347_RS00020 WP_013350724.1 3030..4142(+) (recF) [Bacillus velezensis strain LT-2]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=737908 OD347_RS00020 WP_013350724.1 3030..4142(+) (recF) [Bacillus velezensis strain LT-2]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAAGGCAAAACCAATCTGATGGAAGCCATCTATGTTCTTTCGATGGCAAAATCGCACCGCA
CCTCAAATGATAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTGGTCATCTCCAAAAAAGGTAAAAAGGGCAAAGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCCGAGGACTTAAATCTCGTTAAAGGCAGCCCTCAGGTGAGGAGGAGAT
TTCTTGATATGGAGATCGGGCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCCCAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATTGA
AGCAGCCGCGAAAGTTGTCGCCAAACGTCTGCAGTTTACGGCACAGCTTGAAAAATGGGCGCAGCCGATCCATTCCGGCA
TTTCCCGGGGGCTTGAGGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGGCCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAAACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCATTGT
CTTTGAAGCTGGCCGAAATAGATTTAATTCATGAAGAAATCGGAGAATATCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGCCAGTCCCATTTGCTTCATACAATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGTGT
GGATGGCATTGACCACGAAACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.865

100

0.949