Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ODS25_RS14040 Genome accession   NZ_CP107077
Coordinates   2963709..2964329 (-) Length   206 a.a.
NCBI ID   WP_263754754.1    Uniprot ID   -
Organism   Kosakonia cowanii strain LT-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2958709..2969329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODS25_RS14025 helD 2958946..2961000 (-) 2055 WP_263752771.1 DNA helicase IV -
  ODS25_RS14030 - 2961123..2961569 (+) 447 WP_094420311.1 YccF domain-containing protein -
  ODS25_RS14035 yccS 2961586..2963712 (+) 2127 WP_263752772.1 YccS family putative transporter -
  ODS25_RS14040 sxy/tfoX 2963709..2964329 (-) 621 WP_263754754.1 TfoX/Sxy family DNA transformation protein Regulator
  ODS25_RS14045 sulA 2964546..2965055 (+) 510 WP_263752773.1 SOS-induced cell division inhibitor SulA -
  ODS25_RS14050 ompA 2965423..2966472 (+) 1050 WP_023481315.1 porin OmpA -
  ODS25_RS14055 matP 2966559..2967011 (-) 453 WP_023481810.1 macrodomain Ter protein MatP -
  ODS25_RS14060 - 2967194..2968939 (+) 1746 WP_263752775.1 Lon protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23463.16 Da        Isoelectric Point: 10.1173

>NTDB_id=737899 ODS25_RS14040 WP_263754754.1 2963709..2964329(-) (sxy/tfoX) [Kosakonia cowanii strain LT-1]
MEDLSYERIYQSREYLTSLGQISHRAHFGGYSLAVDNIVFAMIAEGKLYLRACDESAQYDVVRRAPLLSLNKRGRQISLN
YFYVSDNVWGDRGLLLKLSTLALDAARREKTQREKLFRLRDLPNLSSQLEFQLQQAGIKDAQILRLLGAKVCWLRLRKMN
KQLSVKVLFALEGAIVGIHEAALPASRRQALLEWSNDVINKGANPL

Nucleotide


Download         Length: 621 bp        

>NTDB_id=737899 ODS25_RS14040 WP_263754754.1 2963709..2964329(-) (sxy/tfoX) [Kosakonia cowanii strain LT-1]
ATGGAAGACCTATCTTATGAACGGATATATCAATCGCGCGAATATCTCACTTCACTCGGACAAATTAGCCATCGCGCCCA
CTTTGGTGGTTATAGCCTTGCAGTGGATAACATCGTTTTTGCGATGATAGCCGAGGGGAAACTCTACTTACGCGCCTGTG
ATGAAAGCGCGCAGTATGACGTCGTCCGGCGTGCACCGCTTTTAAGTCTCAACAAGCGGGGGCGTCAGATATCGTTAAAT
TATTTCTATGTCAGCGACAATGTATGGGGTGACCGCGGCTTACTGCTGAAGCTTTCTACACTTGCGCTTGATGCAGCACG
GCGGGAGAAAACACAGCGCGAAAAACTTTTTCGCCTGCGCGATCTACCCAATCTTTCCAGTCAACTCGAGTTTCAATTGC
AGCAGGCCGGCATTAAAGATGCGCAAATCCTGCGGCTACTTGGTGCGAAAGTTTGCTGGCTCAGACTTCGGAAAATGAAT
AAACAACTCAGTGTAAAAGTGTTATTTGCACTGGAAGGGGCCATCGTCGGCATTCATGAAGCAGCGCTTCCGGCAAGTCG
TCGCCAGGCGCTGCTTGAGTGGTCTAATGATGTGATCAATAAAGGAGCTAACCCTCTCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(118-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.683

99.515

0.524