Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   K6K01_RS21180 Genome accession   NZ_AP024622
Coordinates   4063315..4064004 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain BEST3096     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4058315..4069004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K01_RS21160 (BsBEST3096_40870) yxeA 4059244..4059591 (-) 348 WP_003227084.1 YxeA family protein -
  K6K01_RS21165 (BsBEST3096_40880) yxdM 4059605..4061489 (-) 1885 Protein_4140 ABC transporter permease YxdM -
  K6K01_RS21170 tpeL 4061464..4062197 (-) 734 Protein_4141 ABC transporter ATP-binding protein -
  K6K01_RS21175 (BsBEST3096_40920) yxdK 4062341..4063318 (-) 978 WP_014481410.1 two-component system sensor histidine kinase YxdK -
  K6K01_RS21180 (BsBEST3096_40930) braR 4063315..4064004 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  K6K01_RS21185 (BsBEST3096_40940) iolJ 4064112..4064984 (-) 873 WP_014481411.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  K6K01_RS21190 (BsBEST3096_40950) iolI 4065005..4065841 (-) 837 WP_003244546.1 2-keto-myo-inositol isomerase -
  K6K01_RS21195 (BsBEST3096_40960) iolH 4065927..4066796 (-) 870 WP_003243149.1 sugar phosphate isomerase/epimerase family protein -
  K6K01_RS21200 (BsBEST3096_40970) iolG 4066816..4067850 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=73788 K6K01_RS21180 WP_003243527.1 4063315..4064004(-) (braR) [Bacillus subtilis strain BEST3096]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=73788 K6K01_RS21180 WP_003243527.1 4063315..4064004(-) (braR) [Bacillus subtilis strain BEST3096]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATACCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment