Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PALA20_RS13710 | Genome accession | NZ_CP107064 |
| Coordinates | 2911524..2912396 (-) | Length | 290 a.a. |
| NCBI ID | WP_003094651.1 | Uniprot ID | A0AAQ3LID6 |
| Organism | Pseudomonas aeruginosa strain PALA20 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2906524..2917396
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PALA20_RS13665 (PALA20_02704) | - | 2907385..2907555 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| PALA20_RS13670 (PALA20_02705) | - | 2907581..2908030 (-) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PALA20_RS13675 (PALA20_02706) | - | 2908027..2908656 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PALA20_RS13680 (PALA20_02707) | - | 2908789..2909214 (+) | 426 | WP_003094666.1 | GNAT family N-acetyltransferase | - |
| PALA20_RS13685 (PALA20_02708) | - | 2909211..2909681 (+) | 471 | WP_003094664.1 | hypothetical protein | - |
| PALA20_RS13690 (PALA20_02709) | - | 2909678..2910367 (+) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| PALA20_RS13695 (PALA20_02710) | - | 2910473..2910682 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| PALA20_RS13700 (PALA20_02711) | yacG | 2910719..2910919 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PALA20_RS13705 (PALA20_02712) | coaE | 2910916..2911527 (-) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PALA20_RS13710 (PALA20_02713) | pilD | 2911524..2912396 (-) | 873 | WP_003094651.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PALA20_RS13715 (PALA20_02714) | pilC | 2912400..2913620 (-) | 1221 | WP_003094649.1 | type II secretion system F family protein | Machinery gene |
| PALA20_RS13720 (PALA20_02715) | pilB | 2913624..2915324 (-) | 1701 | WP_003094647.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PALA20_RS13725 | - | 2915554..2916018 (+) | 465 | WP_031630343.1 | pilin | - |
| PALA20_RS13735 (PALA20_02717) | nadC | 2916222..2917070 (-) | 849 | WP_003094645.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31852.89 Da Isoelectric Point: 7.7068
>NTDB_id=737792 PALA20_RS13710 WP_003094651.1 2911524..2912396(-) (pilD) [Pseudomonas aeruginosa strain PALA20]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQANYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQANYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=737792 PALA20_RS13710 WP_003094651.1 2911524..2912396(-) (pilD) [Pseudomonas aeruginosa strain PALA20]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGAACTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGAACTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.516 |
96.897 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
52.65 |
97.586 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |