Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ODE14_RS17090 Genome accession   NZ_CP107053
Coordinates   3753533..3754882 (-) Length   449 a.a.
NCBI ID   WP_263602275.1    Uniprot ID   -
Organism   Chryseobacterium sp. PET-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3748533..3759882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODE14_RS17060 - 3750595..3751173 (-) 579 WP_263602272.1 HupE/UreJ family protein -
  ODE14_RS17065 - 3751239..3751481 (+) 243 WP_248394924.1 hypothetical protein -
  ODE14_RS17070 - 3751457..3751759 (+) 303 WP_263602273.1 hypothetical protein -
  ODE14_RS17075 - 3751756..3752256 (+) 501 WP_248394922.1 DUF6702 family protein -
  ODE14_RS17080 - 3752258..3752851 (-) 594 WP_263602274.1 ACP phosphodiesterase -
  ODE14_RS17085 - 3752919..3753473 (-) 555 WP_248394920.1 transposase -
  ODE14_RS17090 radA 3753533..3754882 (-) 1350 WP_263602275.1 DNA repair protein RadA Machinery gene
  ODE14_RS17095 - 3755421..3755990 (+) 570 WP_263602276.1 YceI family protein -
  ODE14_RS17100 - 3756045..3756473 (-) 429 WP_248394918.1 hypothetical protein -
  ODE14_RS17105 - 3756568..3758175 (+) 1608 WP_263602277.1 CTP synthase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49824.38 Da        Isoelectric Point: 6.6120

>NTDB_id=737762 ODE14_RS17090 WP_263602275.1 3753533..3754882(-) (radA) [Chryseobacterium sp. PET-29]
MAKLKTAYFCQNCGTQFSQWMGQCKNCGQWNTLVEEVVEKTSSKTPPFSKSKQHVINIIEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
DPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHYCFAGEIGLSGEIRPI
AQAEQRITEAEKLGYEKIFISNLNKLPKRKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=737762 ODE14_RS17090 WP_263602275.1 3753533..3754882(-) (radA) [Chryseobacterium sp. PET-29]
ATGGCAAAACTTAAAACAGCATATTTCTGTCAGAACTGCGGAACACAATTTTCCCAATGGATGGGGCAATGCAAAAACTG
TGGGCAATGGAATACCCTGGTGGAAGAAGTAGTAGAAAAAACCTCATCAAAAACACCTCCGTTTTCAAAATCAAAACAGC
ACGTGATCAATATCATTGAGGTTGAAACCAGCGAAGAACCAAGAATAAAAACCCCTTCCGAAGAACTCAACCGCGTTTTG
GGTGGCGGAATTGTTCTAGGATCCGTAACCCTTATTGGCGGAGAGCCCGGAATCGGCAAATCTACCCTGCTTCTTCAGCT
GGCTTTAAAGATGAAGAAAAAAATCTTCTATGTTTCCGGGGAAGAAAGTGCTTCGCAGATCAAGATGAGAGCCGACAGAT
TAACGGATATTCAGAATCCCAACTGTTTTTTGTTCACAGAAACCAGTCTTGAAAAAATTCTTCATGAAGCCAAAAAACTG
GACCCTGATTTCGTTATTATCGATTCCATTCAGACGCTGCAGTCTCAATTAATTGAAAGCTCACCCGGAACGGTTTCTCA
AATCCGGGAATGTTCAAACGAAATTATTAAATATGCTAAAGAAAATAATGTTCCCGTATTTTTAGTGGGTCATATTACCA
AAGACGGGCAGATTGCCGGACCAAAGGTGCTGGAACACATGGTTGATGTCGTTTTAAATTTTGACGGCGACAGAAATCAT
CTCTTCCGATTATTAAGAGCCAACAAAAACCGTTTTGGATCCACTTCGGAAATTGGGATTTATGAAATGGTTTCCCAGGG
ATTAAAAGAAATTAAAAATCCTTCTGAAATCCTGATTACCAAAAAATTTGAAGAACTTTCCGGAAATTCAGTAGCCGTGA
CATTGGAAGGAAACCGTCCGATGCTGCTGGAAATTCAGGCATTGGTAAGTACGGCCGTTTATGGAACCCCACAAAGAAGT
TCCACGGGTTTTGATGCCAAAAGACTGAATATGCTTCTTGCTGTTCTGGAAAAAAGAGCAGGTTTCCAGCTGGGTGCAAA
AGATGTTTTCTTAAATATCACAGGAGGAATAAAAACAGATGATCCGGCACTGGATCTAGCCGTTGTCGCCTCTATTCTTT
CCTCTAATGAAGATATTGCGATTTCCGAACATTATTGTTTTGCAGGAGAAATTGGCTTAAGCGGGGAAATTCGTCCGATT
GCACAGGCGGAACAGCGGATTACAGAAGCTGAAAAATTAGGCTATGAGAAAATTTTTATTTCCAATCTCAATAAACTTCC
AAAAAGAAAATTCGGAATCAAGATCGAAGAAGTGAGTAAAATTGAAGATTTCCATGAACGCCTTTTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-217)

Subunit ChlI of Mg-chelatase (ChlI)

(338-422)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.558

100

0.499
  radA Streptococcus mitis NCTC 12261

47.527

100

0.492
  radA Streptococcus pneumoniae D39

47.414

100

0.49
  radA Streptococcus pneumoniae TIGR4

47.414

100

0.49
  radA Streptococcus pneumoniae R6

47.414

100

0.49
  radA Streptococcus pneumoniae Rx1

47.414

100

0.49
  radA Streptococcus mitis SK321

49.42

95.991

0.474