Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ODE14_RS15005 Genome accession   NZ_CP107053
Coordinates   3294798..3295907 (-) Length   369 a.a.
NCBI ID   WP_263602016.1    Uniprot ID   -
Organism   Chryseobacterium sp. PET-29     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3289798..3300907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODE14_RS14975 - 3290311..3291285 (+) 975 WP_263602013.1 ion channel -
  ODE14_RS14980 - 3291282..3291770 (+) 489 WP_248389052.1 YkgJ family cysteine cluster protein -
  ODE14_RS14985 - 3291896..3292243 (+) 348 WP_263602014.1 hypothetical protein -
  ODE14_RS14990 - 3292426..3292692 (+) 267 WP_263602015.1 hypothetical protein -
  ODE14_RS14995 - 3292722..3293087 (-) 366 WP_248389046.1 iron chaperone -
  ODE14_RS15000 gdhA 3293249..3294607 (-) 1359 WP_248389044.1 NADP-specific glutamate dehydrogenase -
  ODE14_RS15005 dprA 3294798..3295907 (-) 1110 WP_263602016.1 DNA-processing protein DprA Machinery gene
  ODE14_RS15010 - 3295975..3296745 (-) 771 WP_248389040.1 rhomboid family intramembrane serine protease -
  ODE14_RS15015 - 3296991..3297917 (+) 927 WP_263602017.1 DUF3078 domain-containing protein -
  ODE14_RS15020 sufD 3298057..3299364 (-) 1308 WP_263603847.1 Fe-S cluster assembly protein SufD -
  ODE14_RS15025 sufC 3299457..3300200 (-) 744 WP_248389038.1 Fe-S cluster assembly ATPase SufC -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41645.58 Da        Isoelectric Point: 6.5722

>NTDB_id=737759 ODE14_RS15005 WP_263602016.1 3294798..3295907(-) (dprA) [Chryseobacterium sp. PET-29]
MYSEEHLYSIALRECNLIGDINFHKLVRTFGSAKKAWLNAKKEYKKLDGFGYRMVADIGNPEHLKFAENELAFCEKNNII
INLRHFGDLPELLNECNDAPAILYQKGNFDDTNQRISMVGTRNMTSYGQQFLTDFFEETHSCNYISVSGLALGIDKEIHE
QSLQKEIPTAAVLAHGFHMIYPSKNRKLSEKILEEGGALFTEFNSSRKPDRENFIQRNRIVAGLSPSTIVVETAFGGGSV
STATFANQYNREVFALPGKITDKQSQGCNQLIYHNKAACISTIKDLIDDLGLKKPKVKMDELFSRSEISIQLTEYQQLIF
NLISEHPSISLDEIIEKTDLASHKILPVILDLELLGKVKSLSGRQFITI

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=737759 ODE14_RS15005 WP_263602016.1 3294798..3295907(-) (dprA) [Chryseobacterium sp. PET-29]
ATGTATTCTGAAGAACATCTCTATTCTATTGCCCTCCGCGAATGTAATTTAATTGGTGATATTAATTTCCATAAACTTGT
GCGCACTTTCGGAAGTGCAAAAAAAGCATGGCTGAACGCCAAGAAAGAGTACAAAAAACTTGACGGCTTTGGCTACCGTA
TGGTTGCTGACATCGGAAATCCCGAACACCTGAAGTTTGCAGAGAATGAACTCGCATTTTGTGAAAAGAACAATATTATT
ATTAATCTCAGGCATTTTGGTGACCTTCCGGAATTGCTCAATGAGTGCAACGATGCTCCGGCCATTCTTTACCAAAAAGG
AAACTTTGATGACACAAACCAACGGATCAGCATGGTCGGAACCCGAAATATGACGTCATACGGACAACAATTTCTTACCG
ATTTTTTTGAAGAAACACATTCCTGCAATTATATTTCCGTGAGCGGACTTGCTTTGGGTATTGACAAAGAAATTCATGAG
CAGTCTCTTCAAAAAGAAATTCCTACCGCTGCAGTTTTAGCACATGGATTTCATATGATTTATCCTTCAAAAAACAGAAA
ACTGTCCGAAAAAATTTTGGAAGAAGGTGGTGCATTATTCACAGAATTCAACTCTTCCCGGAAACCGGACCGCGAAAATT
TTATCCAGCGGAATAGGATTGTTGCCGGTTTATCCCCTTCAACAATCGTTGTTGAGACTGCTTTTGGTGGCGGATCAGTA
AGTACTGCGACATTCGCCAACCAATACAACCGCGAAGTCTTCGCCTTACCAGGAAAAATTACAGATAAACAAAGCCAGGG
TTGCAATCAGCTGATTTATCACAACAAGGCAGCATGCATTTCTACCATTAAAGATCTTATTGATGATTTAGGTCTTAAAA
AGCCTAAAGTAAAAATGGATGAATTATTTTCACGCAGTGAAATCAGTATTCAATTGACTGAATACCAACAATTAATATTT
AATCTTATATCAGAACATCCATCGATCTCTTTAGATGAAATTATTGAGAAAACAGATCTTGCATCTCATAAAATTTTACC
CGTAATTCTGGATTTGGAGCTTTTGGGGAAAGTAAAATCACTTTCGGGGAGACAATTTATTACAATATGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(310-363)

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

54.496

99.458

0.542