Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CT3_RS19950 Genome accession   NZ_AP019749
Coordinates   4407101..4408666 (-) Length   521 a.a.
NCBI ID   WP_066541479.1    Uniprot ID   -
Organism   Comamonas terrigena NBRC 13299     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4402101..4413666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT3_RS19920 (CT3_39380) - 4402518..4402835 (-) 318 WP_066541472.1 multidrug efflux SMR transporter -
  CT3_RS19925 - 4403105..4403517 (+) 413 Protein_3918 VOC family protein -
  CT3_RS19930 (CT3_39410) - 4403518..4404018 (-) 501 WP_066541473.1 PIN domain-containing protein -
  CT3_RS19935 (CT3_39420) - 4404015..4405319 (-) 1305 WP_066541475.1 THUMP domain-containing protein -
  CT3_RS19940 (CT3_39430) - 4405460..4405831 (+) 372 WP_083520633.1 hypothetical protein -
  CT3_RS19945 (CT3_39440) - 4405883..4406896 (-) 1014 WP_066541476.1 ribokinase -
  CT3_RS19950 (CT3_39450) rpoN/rpoN1 4407101..4408666 (-) 1566 WP_066541479.1 RNA polymerase factor sigma-54 Machinery gene
  CT3_RS19955 (CT3_39460) lptB 4408723..4409502 (-) 780 WP_098065964.1 LPS export ABC transporter ATP-binding protein -
  CT3_RS19960 (CT3_39470) lptA 4409499..4410140 (-) 642 WP_066541483.1 lipopolysaccharide transport periplasmic protein LptA -
  CT3_RS19965 (CT3_39480) - 4410295..4410945 (-) 651 WP_066541485.1 thiol:disulfide interchange protein DsbA/DsbL -
  CT3_RS19970 (CT3_39490) - 4411015..4411704 (-) 690 WP_066541487.1 SPOR domain-containing protein -
  CT3_RS19975 (CT3_39500) argS 4411723..4413432 (-) 1710 WP_066541488.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 57250.30 Da        Isoelectric Point: 4.8447

>NTDB_id=73775 CT3_RS19950 WP_066541479.1 4407101..4408666(-) (rpoN/rpoN1) [Comamonas terrigena NBRC 13299]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELAQEVEQMLDDNPFLEVDSDDAPREDFGLSQSDTPAQGDDYAADGALT
AGAAEAPADSAEGPGSTEYDAPDWEGDGTSELRPDDSEWGGDAPARNAQGGDGDEVSALDLARAHESLTDHLLRQSLSLH
LSELDRYVLRFLIENLNDDGYLEESLQSLAEGLAGTDDPEQLDELVHRFTVALRLLHSLEPVGVGAQGLAECLQLQLNHL
LQRGEAEASVVETALTICAQPLDLLARRDVRRLMQATGSSEERTRMAMALIARLEPRPGRRFVNVERNIIVPDVIVTRAG
RRASEGTPQFNVQLNPDVLPRLRVHDVYAGALRGHKGSEGHAGLQQRLQEARWFIKNVQQRFDTILRVSRAIVERQKNFF
VHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPHGTFELKYFFGSGLGTETGGNASSTAVRALIKQFVSAENAKK
PLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKTL

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=73775 CT3_RS19950 WP_066541479.1 4407101..4408666(-) (rpoN/rpoN1) [Comamonas terrigena NBRC 13299]
TTGAAGCCTGGTTTGTCACTGCGGGTGTCGCAGCATTTGGCGCTGACGCCGCAATTGCAGCAGTCGATCCGCTTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTCGAGCAGATGCTCGACGACAACCCGTTTCTGGAAGTCGACAGCGACGACG
CCCCCCGCGAAGACTTCGGCCTGTCCCAGTCGGACACGCCGGCGCAGGGCGATGACTATGCCGCCGATGGCGCGCTGACG
GCAGGGGCTGCGGAGGCGCCCGCCGACAGTGCGGAAGGCCCCGGCAGCACGGAATACGATGCCCCCGACTGGGAGGGCGA
CGGCACCAGCGAACTGCGCCCCGATGACAGCGAATGGGGCGGCGATGCCCCGGCGCGCAACGCCCAGGGCGGCGATGGCG
ACGAGGTCAGCGCCCTGGATCTGGCCCGTGCACATGAATCGCTGACCGACCACCTGCTGCGCCAGTCGCTGTCGCTGCAC
CTGTCCGAGCTGGACCGCTATGTGCTGCGTTTCCTGATCGAGAACCTGAATGACGACGGCTACCTCGAAGAGTCGCTGCA
GTCCCTGGCCGAGGGCCTGGCCGGCACGGACGATCCAGAGCAGCTCGACGAGCTGGTGCACCGCTTCACCGTGGCACTGC
GGCTGCTGCACAGCCTGGAGCCGGTGGGCGTGGGCGCCCAGGGGCTGGCCGAATGCCTGCAGTTGCAGCTGAACCATCTG
CTGCAGCGCGGTGAGGCCGAGGCCAGTGTGGTGGAGACGGCGCTGACCATCTGCGCCCAGCCGCTGGACCTGCTGGCCCG
GCGCGATGTGCGCCGCCTGATGCAGGCCACCGGCAGCAGCGAAGAGCGCACCCGCATGGCCATGGCACTGATCGCCCGGC
TGGAGCCCCGGCCCGGCCGGCGCTTTGTCAATGTGGAGCGCAACATCATCGTGCCGGACGTGATCGTCACCCGCGCCGGC
CGCCGCGCCAGCGAAGGCACACCCCAGTTCAACGTGCAGCTCAACCCCGACGTGCTGCCGCGTCTGCGCGTGCACGATGT
GTATGCCGGTGCGCTGCGCGGCCACAAGGGCAGCGAAGGCCATGCCGGCCTGCAGCAGCGCCTGCAGGAAGCCCGCTGGT
TCATCAAGAACGTGCAGCAGCGTTTCGACACCATCTTGCGGGTGTCGCGCGCCATCGTGGAGCGGCAGAAGAACTTCTTC
GTGCACGGCGAGCTGGCCATGCGCCCGCTGGTGCTGCGCGACATCGCCGACGAACTGGGCCTGCACGAATCCACCATCAG
CCGGGTGACCACCGCCAAGTACATGGCCACGCCGCACGGCACCTTCGAGCTCAAGTATTTCTTCGGCTCCGGGCTGGGCA
CGGAAACCGGCGGCAATGCCTCCAGCACCGCAGTGCGGGCGCTGATCAAGCAGTTTGTCTCGGCCGAGAACGCCAAGAAG
CCGCTGTCGGACAGCCAGATCGCCGAAATGCTCAAGGAGCAGGGCATCGAGTGCGCCCGCCGCACCGTGGCCAAGTACCG
TGAGGCGCTGAAGATCGCGCCGGCCAATCTGCGCAAGACGCTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(141-348)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(364-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.166

100

0.532

Multiple sequence alignment