Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OEC00_RS04120 Genome accession   NZ_CP107043
Coordinates   821708..822304 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KPTA-2108     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 816708..827304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEC00_RS04105 (OEC00_04105) helD 816916..818970 (-) 2055 WP_023342915.1 DNA helicase IV -
  OEC00_RS04110 (OEC00_04110) - 819095..819541 (+) 447 WP_021312905.1 YccF domain-containing protein -
  OEC00_RS04115 (OEC00_04115) yccS 819559..821694 (+) 2136 WP_002898422.1 YccS family putative transporter -
  OEC00_RS04120 (OEC00_04120) sxy/tfoX 821708..822304 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  OEC00_RS04125 (OEC00_04125) sulA 822653..823162 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  OEC00_RS04130 (OEC00_04130) ompA 823515..824585 (+) 1071 WP_002898408.1 porin OmpA -
  OEC00_RS04135 (OEC00_04135) matP 824717..825169 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  OEC00_RS04140 (OEC00_04140) - 825355..827112 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=737708 OEC00_RS04120 WP_004179217.1 821708..822304(-) (sxy/tfoX) [Klebsiella pneumoniae strain KPTA-2108]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=737708 OEC00_RS04120 WP_004179217.1 821708..822304(-) (sxy/tfoX) [Klebsiella pneumoniae strain KPTA-2108]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCAAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51