Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NQA44_RS16945 Genome accession   NZ_CP107040
Coordinates   3608674..3609297 (-) Length   207 a.a.
NCBI ID   WP_032726136.1    Uniprot ID   -
Organism   Klebsiella oxytoca strain TYL-T1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3603674..3614297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQA44_RS16930 (NQA44_16930) helD 3603910..3605964 (-) 2055 WP_016808043.1 DNA helicase IV -
  NQA44_RS16935 (NQA44_16935) - 3606087..3606533 (+) 447 WP_004100782.1 YccF domain-containing protein -
  NQA44_RS16940 (NQA44_16940) yccS 3606551..3608686 (+) 2136 WP_023320658.1 YccS family putative transporter -
  NQA44_RS16945 (NQA44_16945) sxy/tfoX 3608674..3609297 (-) 624 WP_032726136.1 TfoX/Sxy family DNA transformation protein Regulator
  NQA44_RS16950 (NQA44_16950) sulA 3609759..3610268 (+) 510 WP_032726007.1 SOS-induced cell division inhibitor SulA -
  NQA44_RS16955 (NQA44_16955) ompA 3610622..3611692 (+) 1071 WP_004100770.1 porin OmpA -
  NQA44_RS16960 (NQA44_16960) matP 3611803..3612255 (-) 453 WP_004100768.1 macrodomain Ter protein MatP -
  NQA44_RS16965 (NQA44_16965) - 3612441..3614198 (+) 1758 WP_016808048.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23674.68 Da        Isoelectric Point: 10.2095

>NTDB_id=737697 NQA44_RS16945 WP_032726136.1 3608674..3609297(-) (sxy/tfoX) [Klebsiella oxytoca strain TYL-T1]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEGYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=737697 NQA44_RS16945 WP_032726136.1 3608674..3609297(-) (sxy/tfoX) [Klebsiella oxytoca strain TYL-T1]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCTAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGGCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493