Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ODQ18_RS18590 Genome accession   NZ_CP107039
Coordinates   3595478..3596869 (+) Length   463 a.a.
NCBI ID   WP_041850475.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3590478..3601869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS18570 (ODQ18_18570) yvyE 3591630..3592283 (-) 654 WP_003227979.1 YigZ family protein -
  ODQ18_RS18575 (ODQ18_18575) degS 3592500..3593657 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ODQ18_RS18580 (ODQ18_18580) degU 3593740..3594429 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ODQ18_RS18585 (ODQ18_18585) fakBA 3594527..3595372 (+) 846 WP_003227986.1 DegV family protein -
  ODQ18_RS18590 (ODQ18_18590) comFA 3595478..3596869 (+) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  ODQ18_RS18595 (ODQ18_18595) comFB 3596929..3597225 (+) 297 WP_003227989.1 late competence protein ComFB -
  ODQ18_RS18600 (ODQ18_18600) comFC 3597189..3597911 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  ODQ18_RS18605 (ODQ18_18605) yvyF 3597985..3598404 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ODQ18_RS18610 (ODQ18_18610) flgM 3598485..3598751 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  ODQ18_RS18615 (ODQ18_18615) flgN 3598767..3599249 (+) 483 WP_014481048.1 flagellar protein FlgN -
  ODQ18_RS18620 (ODQ18_18620) flgK 3599268..3600791 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ODQ18_RS18625 (ODQ18_18625) flgL 3600802..3601698 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52485.50 Da        Isoelectric Point: 9.9185

>NTDB_id=737677 ODQ18_RS18590 WP_041850475.1 3595478..3596869(+) (comFA) [Bacillus subtilis strain 11060]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENAPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTIVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=737677 ODQ18_RS18590 WP_041850475.1 3595478..3596869(+) (comFA) [Bacillus subtilis strain 11060]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGAAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGC
ACCAAACTGGAAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCATCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGTGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.84

100

0.978