Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ODQ18_RS15380 Genome accession   NZ_CP107039
Coordinates   2967708..2967998 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain 11060     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2962708..2972998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS15365 (ODQ18_15365) yabE 2962903..2964216 (-) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -
  ODQ18_RS15370 (ODQ18_15370) dayD 2964372..2965139 (-) 768 WP_014475570.1 TatD family hydrolase -
  ODQ18_RS15375 (ODQ18_15375) metG 2965219..2967213 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  ODQ18_RS15380 (ODQ18_15380) abrB 2967708..2967998 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  ODQ18_RS15385 (ODQ18_15385) rsmI 2968047..2968925 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ODQ18_RS15390 (ODQ18_15390) yazA 2968900..2969199 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  ODQ18_RS15395 (ODQ18_15395) trmNF 2969186..2969929 (-) 744 WP_003226765.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ODQ18_RS15400 (ODQ18_15400) yabA 2969988..2970347 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  ODQ18_RS15405 (ODQ18_15405) ricT 2970362..2971189 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  ODQ18_RS15410 (ODQ18_15410) holB 2971192..2972181 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  ODQ18_RS15415 (ODQ18_15415) yaaR 2972193..2972633 (-) 441 WP_009966249.1 YaaR family protein -
  ODQ18_RS15420 (ODQ18_15420) darA 2972646..2972975 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=737664 ODQ18_RS15380 WP_003226760.1 2967708..2967998(+) (abrB) [Bacillus subtilis strain 11060]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=737664 ODQ18_RS15380 WP_003226760.1 2967708..2967998(+) (abrB) [Bacillus subtilis strain 11060]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1