Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   ODQ18_RS09630 Genome accession   NZ_CP107039
Coordinates   1846432..1847385 (-) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain 11060     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1841432..1852385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS09600 (ODQ18_09600) appD 1841551..1842537 (-) 987 WP_033883591.1 oligopeptide ABC transporter ATP-binding protein AppD -
  ODQ18_RS09605 (ODQ18_09605) yjaZ 1842729..1843514 (-) 786 WP_119899243.1 DUF2268 domain-containing protein -
  ODQ18_RS09610 (ODQ18_09610) fabF 1843590..1844831 (-) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  ODQ18_RS09615 (ODQ18_09615) fabH 1844854..1845792 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  ODQ18_RS09620 (ODQ18_09620) yjzB 1845957..1846196 (+) 240 WP_003232972.1 spore coat protein YjzB -
  ODQ18_RS09625 (ODQ18_09625) comZ 1846226..1846417 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  ODQ18_RS09630 (ODQ18_09630) med 1846432..1847385 (-) 954 WP_003245494.1 transcriptional regulator Med Regulator
  ODQ18_RS09635 (ODQ18_09635) - 1847476..1848033 (-) 558 WP_003232974.1 hypothetical protein -
  ODQ18_RS09640 (ODQ18_09640) - 1848115..1848849 (-) 735 WP_003245223.1 hypothetical protein -
  ODQ18_RS09645 (ODQ18_09645) yjzD 1849098..1849283 (+) 186 WP_003245236.1 YjzD family protein -
  ODQ18_RS09650 (ODQ18_09650) yjzC 1849329..1849508 (-) 180 WP_003245356.1 YjzC family protein -
  ODQ18_RS09655 (ODQ18_09655) argF 1849594..1850553 (-) 960 WP_003232980.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=737646 ODQ18_RS09630 WP_003245494.1 1846432..1847385(-) (med) [Bacillus subtilis strain 11060]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=737646 ODQ18_RS09630 WP_003245494.1 1846432..1847385(-) (med) [Bacillus subtilis strain 11060]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1