Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   ODQ18_RS08110 Genome accession   NZ_CP107039
Coordinates   1572949..1573413 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain 11060     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1567949..1578413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS08090 (ODQ18_08090) fadH 1569137..1569901 (-) 765 WP_041850885.1 2,4-dienoyl-CoA reductase -
  ODQ18_RS08095 (ODQ18_08095) ppeE 1570044..1570904 (+) 861 WP_041850886.1 metallophosphoesterase -
  ODQ18_RS08100 (ODQ18_08100) ltdD 1570961..1571455 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  ODQ18_RS08105 (ODQ18_08105) ykuC 1571531..1572823 (+) 1293 WP_014479656.1 MFS transporter -
  ODQ18_RS08110 (ODQ18_08110) kre 1572949..1573413 (+) 465 WP_003232406.1 YkyB family protein Regulator
  ODQ18_RS08115 (ODQ18_08115) cheV 1573457..1574368 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  ODQ18_RS08120 (ODQ18_08120) - 1574572..1574733 (+) 162 WP_014476654.1 hypothetical protein -
  ODQ18_RS08125 (ODQ18_08125) dapX 1574935..1576116 (+) 1182 WP_041850887.1 aminotransferase A -
  ODQ18_RS08130 (ODQ18_08130) kinA 1576126..1577946 (-) 1821 WP_015252197.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=737637 ODQ18_RS08110 WP_003232406.1 1572949..1573413(+) (kre) [Bacillus subtilis strain 11060]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=737637 ODQ18_RS08110 WP_003232406.1 1572949..1573413(+) (kre) [Bacillus subtilis strain 11060]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1