Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ODQ18_RS07890 Genome accession   NZ_CP107039
Coordinates   1533199..1533477 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain 11060     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1528199..1538477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS07870 (ODQ18_07870) ade 1528263..1529996 (-) 1734 WP_041850868.1 adenine deaminase -
  ODQ18_RS07875 (ODQ18_07875) ktrC 1530152..1530817 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  ODQ18_RS07880 (ODQ18_07880) ykqA 1530880..1531707 (-) 828 WP_041850869.1 gamma-glutamylcyclotransferase -
  ODQ18_RS07885 (ODQ18_07885) kinC 1531723..1533009 (-) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  ODQ18_RS07890 (ODQ18_07890) abrB 1533199..1533477 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  ODQ18_RS07895 (ODQ18_07895) mreBH 1533761..1534768 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  ODQ18_RS07900 (ODQ18_07900) ykpC 1534869..1535003 (+) 135 WP_003238865.1 protein YkpC -
  ODQ18_RS07905 (ODQ18_07905) ampS 1535112..1536344 (+) 1233 WP_041850870.1 aminopeptidase -
  ODQ18_RS07910 (ODQ18_07910) panEB 1536378..1537289 (-) 912 WP_041850871.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=737635 ODQ18_RS07890 WP_003244728.1 1533199..1533477(-) (abrB) [Bacillus subtilis strain 11060]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=737635 ODQ18_RS07890 WP_003244728.1 1533199..1533477(-) (abrB) [Bacillus subtilis strain 11060]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGGGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576