Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ODQ18_RS05480 Genome accession   NZ_CP107039
Coordinates   972274..973404 (-) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 967274..978404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS05440 (ODQ18_05440) yobQ 967444..968169 (+) 726 WP_072175277.1 helix-turn-helix domain-containing protein -
  ODQ18_RS05445 (ODQ18_05445) csaA 968234..968566 (+) 333 WP_032725963.1 chaperone CsaA -
  ODQ18_RS05450 (ODQ18_05450) aoxN 968816..970252 (-) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  ODQ18_RS05455 (ODQ18_05455) yobM 970380..970937 (+) 558 WP_038829958.1 SMI1/KNR4 family protein -
  ODQ18_RS05460 (ODQ18_05460) - 971038..971193 (+) 156 Protein_1063 T7SS effector LXG polymorphic toxin -
  ODQ18_RS05465 (ODQ18_05465) - 971191..971565 (+) 375 Protein_1064 UV damage repair protein UvrX -
  ODQ18_RS05470 (ODQ18_05470) - 971787..971987 (+) 201 WP_021481449.1 hypothetical protein -
  ODQ18_RS05475 (ODQ18_05475) - 972141..972284 (-) 144 WP_153801665.1 hypothetical protein -
  ODQ18_RS05480 (ODQ18_05480) rapC 972274..973404 (-) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  ODQ18_RS20995 (ODQ18_05485) - 973537..973614 (-) 78 WP_227057947.1 phage holin -
  ODQ18_RS05490 (ODQ18_05490) - 974395..974769 (-) 375 WP_021481445.1 YoqO family protein -
  ODQ18_RS05495 (ODQ18_05495) - 975022..975318 (-) 297 Protein_1070 SOS response-associated peptidase family protein -
  ODQ18_RS05500 (ODQ18_05500) - 975499..975864 (-) 366 WP_038829962.1 hypothetical protein -
  ODQ18_RS05505 (ODQ18_05505) - 976510..977211 (+) 702 WP_038829963.1 hypothetical protein -
  ODQ18_RS05510 (ODQ18_05510) yopB 977412..977638 (+) 227 Protein_1073 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=737630 ODQ18_RS05480 WP_021481447.1 972274..973404(-) (rapC) [Bacillus subtilis strain 11060]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=737630 ODQ18_RS05480 WP_021481447.1 972274..973404(-) (rapC) [Bacillus subtilis strain 11060]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455