Detailed information NTG0737630

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: ODQ18_RS05480
• Genome accession: NZ_CP107039
• Coordinates: 972274..973404 (-)
• Length: 376 a.a.
• NCBI ID: WP_021481447.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain 11060
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	968234..974769	972274..973404	within	0

Gene organization within MGE regions

Location: 968234..974769

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ODQ18_RS05445 (ODQ18_05445)	csaA	968234..968566 (+)	333	WP_032725963.1	chaperone CsaA	-
ODQ18_RS05450 (ODQ18_05450)	aoxN	968816..970252 (-)	1437	WP_120363441.1	flavin monoamine oxidase family protein	-
ODQ18_RS05455 (ODQ18_05455)	yobM	970380..970937 (+)	558	WP_038829958.1	SMI1/KNR4 family protein	-
ODQ18_RS05460 (ODQ18_05460)	-	971038..971193 (+)	156	Protein_1063	T7SS effector LXG polymorphic toxin	-
ODQ18_RS05465 (ODQ18_05465)	-	971191..971565 (+)	375	Protein_1064	UV damage repair protein UvrX	-
ODQ18_RS05470 (ODQ18_05470)	-	971787..971987 (+)	201	WP_021481449.1	hypothetical protein	-
ODQ18_RS05475 (ODQ18_05475)	-	972141..972284 (-)	144	WP_153801665.1	hypothetical protein	-
ODQ18_RS05480 (ODQ18_05480)	rapC	972274..973404 (-)	1131	WP_021481447.1	tetratricopeptide repeat protein	Regulator
ODQ18_RS20995 (ODQ18_05485)	-	973537..973614 (-)	78	WP_227057947.1	phage holin	-
ODQ18_RS05490 (ODQ18_05490)	-	974395..974769 (-)	375	WP_021481445.1	YoqO family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44393.16 Da
• Isoelectric Point: 5.8915

>NTDB_id=737630 ODQ18_RS05480 WP_021481447.1 972274..973404(-) (rapC) [Bacillus subtilis strain 11060]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide

• Length: 1131 bp

>NTDB_id=737630 ODQ18_RS05480 WP_021481447.1 972274..973404(-) (rapC) [Bacillus subtilis strain 11060]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (221-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	51.064	100	0.511
rapF	Bacillus subtilis subsp. subtilis str. 168	45.119	100	0.455